Merge 107f6f4 into d1a1b7b

.github/workflows/ci.yml

@@ -0,0 +1,52 @@
+name: CI
+
+on:
+  push:
+    branches: [master, test]
+  pull_request:
+    branches: [master, test]
+
+jobs:
+  test:
+    runs-on: ${{ matrix.os }}-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu, windows, macos]
+        python-version: ['3.5', '3.6', '3.7', '3.8', '3.9', 'pypy3']
+        include:
+          # https://github.com/pydoit/doit/issues/372
+          - os: macos
+            pytest-args: -k 'not(cmd_auto or TestFileWatcher)'
+          - os: macos
+            python-version: pypy3
+            pytest-args: -k 'not(cmd_auto or TestFileWatcher or remove_all or ForgetAll)'
+        exclude:
+          - os: windows
+            python-version: pypy3
+    steps:
+      - if: ${{ matrix.os == 'ubuntu' }}
+        run: sudo apt-get install strace
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - run: pip install --user -U pip wheel setuptools
+      - id: pip-cache
+        run: echo "::set-output name=dir::$(pip cache dir)"
+      - uses: actions/cache@v2
+        with:
+          path: ${{ steps.pip-cache.outputs.dir }}
+          key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('setup.py', 'dev_requirements.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-${{ matrix.python-version }}-
+            ${{ runner.os }}-pip-
+      - run: pip install . -r dev_requirements.txt python-coveralls
+      - run: pip freeze
+      - run: pip check
+      - run: doit pyflakes
+      - run: py.test -vv ${{ matrix.pytest-args }}
+      - if: ${{ matrix.os == 'ubuntu' && matrix.python-version == '3.8' }}
+        run: |
+          doit coverage
+          coveralls || echo "TODO: remove when run on a repo that is set up"

.github/workflows/website.yml

@@ -0,0 +1,25 @@
+name: Website
+
+on:
+  push:
+    branches: [master, test]
+  pull_request:
+    branches: [master, test]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - run: sudo apt-get install hunspell hunspell-en-us
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: "3.8"
+      - run: pip install -U pip wheel setuptools
+      - run: pip install . -r doc_requirements.txt -r dev_requirements.txt
+      - run: pip freeze
+      - run: doit -v2 website
+      - uses: actions/upload-artifact@v2
+        with:
+          name: Website
+          path: ./doc/_build

dev_requirements.txt

@@ -3,5 +3,5 @@
 
 pyflakes
 pytest>=5.4.1
-coverage>=4.0
+coverage>=4.0,<5
 doit-py>=0.4.0

doc/stories.rst

@@ -89,15 +89,15 @@ our papers, mentioning it in our funding requests, etc).
 Thanks for developing `doit`, it's just wonderful for computational biology (and
 for many other tasks, of course, but this is our research field:)!
 
-`Cheminformatics data processing @ Atomwise <https://www.atomwise.com>`_ 
+`Cheminformatics data processing @ Atomwise <https://www.atomwise.com>`_
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 by `Jon Sorenson <https://github.com/drkeoni>`_ (2018-12-14)
 
 I came to `doit` from the loose requirement that I wanted a task-dependency/DAG type
 of workflow solution for the various pipelines that our team is constructing.
 I come from computational biology originally, and the similarity of data processing pipelines
-to build systems has long been appreciated.  More than a decade ago 
+to build systems has long been appreciated.  More than a decade ago
 many of us were writing bioinformatics
 pipelines in `make` because it gave us so many features "for free."
 
@@ -112,7 +112,7 @@ from an intermediate stage.
 
 I knew that build-system based frameworks would do exactly what I wanted and not
 hand me too much cruft, and on that note I found `doit`.  It's worked perfectly
-for my needs: 
+for my needs:
 
 - The order of tasks is derived from dependencies
 
@@ -184,7 +184,7 @@ Each sound should be loaded from PCM, converted into MP3 or OGG and linked with
 
 
 `MetalK8s @ Scality <https://www.scality.com/>`_
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 by `Sylvain Laperche <https://github.com/slaperche-scality>`_ (2019-05-06)
 

tests/test_action.py

@@ -25,7 +25,7 @@
 
 @pytest.fixture
 def tmpfile(request):
-    temp = tempfile.TemporaryFile('w+')
+    temp = tempfile.TemporaryFile('w+', encoding="utf-8")
     request.addfinalizer(temp.close)
     return temp
 

tests/test_dependency.py

@@ -17,6 +17,7 @@
 PROGRAM = "%s %s/sample_process.py" % (executable, TEST_PATH)
 
 
+
 def test_unicode_md5():
     data = "我"
     # no exception is raised