[URGENT] inputlist fails when job is submitted

[samwaseda]

These lines

        if group_name:
            with hdf.open(group_name) as hdf_group:
                data = hdf_group["data"]

in inputlist.py fail when the job is submitted to the queueing system

[jan-janssen]

Do we test a non modal sphinx calculation in https://github.com/pyiron/pyiron/blob/master/notebooks/tests_sphinx_sphinx_check_all.ipynb ? Maybe that is something we can add to prevent this in future.

[pmrv]

Setting job.server.run_mode = 'non_modal' in the sphinx notebook does not reproduce the issue. There are some pyiron warnings but the job finishes successfully and gives normal results. Am looking into it on the cluster right now.

Sorry I didn't catch this yesterday immediately.

[jan-janssen]

@pmrv it is not your mistake. We have to develop processes to prevent such issues and @samwaseda approved the pull request just like I did.

[pmrv]

I ran the notebook on the cluster with job.server.queue = 'cm' added to all the jobs and I can't seem to trigger an error, just warnings about default parameters.

@samwaseda Is your error related to the new tests in #750?

[jan-janssen]

@samwaseda Do you still have the original error message? I updated the source reference https://github.com/pyiron/pyiron/blob/inputlist/pyiron/base/generic/inputlist.py#L536
It seems that the issue is that self.table_name is None but this should also affect non_modal jobs ...

[pmrv]

I added a commit to the new PR that sets the group_name to the table_name that is set in the SphinxBase.__init__. I'm not sure what the code path on loading jobs from hdf5 is. In case the job init is skipped, that could lead to there being no table_name set. This should be fixed with that commit.