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config.toml
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config.toml
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version = 0
# TODO [v2]: Scope 'data_methods', 'output', and 'gamma' under a 'metersetmap'
# config
[data_methods]
available = ["monaco", "dicom", "icom", "trf", "mosaiq"]
default_reference = "monaco"
default_evaluation = "icom"
[output]
png_directory = '\\rccc-pdc\PExIT\Physics\Patient Data\Patient Specific Logfile Fluence'
[gamma]
dose_percent_threshold = 2
distance_mm_threshold = 0.5
local_gamma = true
quiet = true
max_gamma = 5
lower_percent_dose_cutoff = 20
# TODO [v2]: Consider changing from:
# {"site": [{"name": "rccc", ...}, {"name": "nbcc", ...}]}
# to:
# {"site": {"rccc": { ... }, "nbcc": { ... } }}
# The question here, 'is order important'? And maybe order preservation is
# helpful, in which case it should remain scoped within a list as opposed to
# a dictionary.
[[site]]
name = "rccc"
# TODO [v2]: Change 'export-directories' to just 'export', move out all
# locations that aren't actually an export location to their own config
# area.
[site.export-directories]
escan = '\\rccc-pdc\Shared\Scanned Documents\RT\PhysChecks\Logfile PDFs'
anonymised_monaco = '\\rccc-pdc\PExIT\DataExchange\anonymised-monaco'
icom_live = '\\rccc-pdc\PExIT\DataExchange\iCom\live'
iviewdb = '\\rccc-pdc\PExIT\DataExchange\iViewDB'
icom = '\\rccc-pdc\PExIT\DataExchange\iCom'
[site.monaco]
focaldata = '\\rccc-monacoda\FocalData'
# TODO: One day support all clinics within the focal data directory
clinic = 'RCCC\1~Clinical'
hostname = 'rccc-monacoda'
dicom_port = '104'
# A directory within FocalData where files can be moved immediately so that
# no files can be opened during the archiving process.
archive_holding = "ToBeArchived"
# The final location for Monaco archives to be stored.
archive_destination = '\\UTILSVR\PhysBack\MONACO_ARCHIVE_1'
[site.mosaiq]
# TODO: One day make it so that timezone is extracted from the Mosaiq
# server
timezone = "Australia/Sydney"
hostname = "msqsql"
port = 1433
alias = "RCCC Mosaiq SQL Server"
physics_qcl_location = "Physics_Check"
[[site.linac]]
name = "2619"
ip = '192.168.100.200'
# TODO: Combine these, make iCom index by linac name, not linac IP
samba_ip = '192.168.100.200'
energies = ["6 MV", "10 MV", "6 MV FFF"]
[site.linac.directories]
qa = '\\rccc-pdc\PExIT\Physics\RCCC Specific Files\Linac Beam Data Record\Synergy 2619'
[[site.linac]]
name = "2694"
ip = '192.168.100.201'
samba_ip = '192.168.100.201'
energies = ["6 MV", "10 MV", "6 MV FFF"]
[site.linac.directories]
qa = '\\rccc-pdc\PExIT\Physics\RCCC Specific Files\Linac Beam Data Record\Synergy 2694'
[site.daily-wlutz]
bb_diameter = 12
[[site]]
name = "nbcc"
[site.export-directories]
escan = '\\nbccc-pdc\Shared\SCAN\ESCAN\Phys\Logfile PDFs'
anonymised_monaco = '\\nbccc-pdc\Physics\NBCC-DataExchange\anonymised-monaco'
icom_live = '\\nbccc-pdc\Physics\NBCC-DataExchange\iCom\live'
iviewdb = '\\nbccc-pdc\Physics\NBCC-DataExchange\iViewDB'
icom = '\\nbccc-pdc\Physics\NBCC-DataExchange\iCom'
[site.monaco]
focaldata = '\\nbccc-monacoda\CMS\FocalData'
clinic = 'NBCCC\1~Clinical'
hostname = 'nbccc-monacoda'
dicom_port = '104'
[site.mosaiq]
timezone = "Australia/Sydney"
hostname = "nbccc-msq"
port = 1433
alias = "NBCC Mosaiq SQL Server"
physics_qcl_location = "Physics"
[[site.linac]]
name = "4299"
ip = '192.168.17.40'
samba_ip = '192.168.17.40'
energies = ["6 MV", "10 MV", "6 MV FFF"]
[site.linac.aliases]
iview = "4299_iView"
[site.linac.directories]
qa = '\\rccc-pdc\PExIT\Physics\NBCCC Specific Files\Linac Beam Data Record\VersaHD 4299'
[[site.linac]]
name = "9183"
ip = '192.168.17.42'
samba_ip = '192.168.17.42'
energies = ["6 MV", "10 MV", "6 MV FFF"]
[site.linac.aliases]
iview = "9183"
[site.linac.directories]
qa = '\\rccc-pdc\PExIT\Physics\NBCCC Specific Files\Linac Beam Data Record\VersaHD 9183'
[site.daily-wlutz]
bb_diameter = 12
[[site]]
name = "sash"
[site.export-directories]
escan = '\\tunnel-sash-physics-server\SASH-Mosaiq-eScan\Logfile PDFs'
anonymised_monaco = '\\tunnel-sash-physics-server\SASH-DataExchange\anonymised-monaco'
icom_live = '\\tunnel-sash-physics-server\SASH-DataExchange\icom\live'
iviewdb = '\\tunnel-sash-physics-server\iViewDB'
icom = '\\tunnel-sash-physics-server\SASH-DataExchange\icom'
[site.monaco]
focaldata = '\\tunnel-sash-monaco\Users\Public\Documents\CMS\FocalData'
clinic = 'SASH\1~Clinical'
[site.mosaiq]
timezone = "Australia/Sydney"
hostname = "rccc-ssh"
port = 1433
alias = "SASH Mosaiq SQL Server"
physics_qcl_location = "Physics_Check"
[[site.linac]]
name = "9002"
ip = '192.168.40.10'
samba_ip = '192.168.100.230'
energies = ["6 MV", "10 MV"]
[site.linac.aliases]
iview = "Default"
[site.linac.directories]
qa = '\\rccc-pdc\PExIT\Physics\SASH Specific Files\Linac Beam Data Record\Synergy 9002'
[site.daily-wlutz]
bb_diameter = 12
[trf_logfiles]
root_directory = '\\rccc-ssh\LinacTRFBackup'
# TODO: Need to deprecate this field and use the site specific config instead.
[icom]
patient_directories = [
'\\rccc-pdc\PExIT\DataExchange\iCom\patients',
'\\nbccc-pdc\Physics\NBCC-DataExchange\iCom\patients',
'\\tunnel-sash-physics-server\SASH-DataExchange\icom\patients',
]
[electron_insert_modelling]
data_path = '\\rccc-pdc\PExIT\Physics\RCCC Specific Files\Dosimetry\Elekta_EFacs\electron_factor_measured_data.csv'
[electron_insert_modelling.patterns]
beam_model_name = 'RiverinaAgility - (\d+)MeV'
applicator = '(\d+)X\d+'
[monaco_archiving]
default_weeks_to_keep = 26
[chart_checks]
archive_path = '\\rccc-pdc\PExIT\Physics\Patient Data\chart_check_archive.json'