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R-HTSCluster.spec
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R-HTSCluster.spec
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%global packname HTSCluster
%global rlibdir %{_datadir}/R/library
Name: R-%{packname}
Version: 1.0
Release: 1%{?dist}
Summary: Clustering high throughput sequencing (HTS) data
Group: Applications/Engineering
License: GPL (>= 2)
URL: http://cran.r-project.org/web/packages/%{packname}/index.html
Source0: http://cran.r-project.org/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch: noarch
Requires: R-core
BuildRequires: R-devel tex(latex)
%description
This package implements two parameterizations of a Poisson mixture model
to cluster observations (e.g., genes) in high throughput sequencing data.
Parameter estimation is performed using either the EM or CEM algorithm,
and the BIC or ICL criteria are used for model selection (i.e., to choose
the number of clusters).
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%clean
rm -rf %{buildroot}
%files
%defattr(-, root, root, -)
%doc %{rlibdir}/HTSCluster/html
%doc %{rlibdir}/HTSCluster/DESCRIPTION
%{rlibdir}/HTSCluster/NAMESPACE
%{rlibdir}/HTSCluster/help
%{rlibdir}/HTSCluster/Meta
%{rlibdir}/HTSCluster/R
%{rlibdir}/HTSCluster/INDEX
%changelog
* Thu Nov 17 2011 Pierre-Yves Chibon <pingou@pingoured.fr> 1.0-1
- initial package for Fedora