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Pre-commit fix #565

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merged 5 commits into from
Jan 14, 2023
Merged

Pre-commit fix #565

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5dd54f6
shorten clean
pz-max Jan 14, 2023
0b8324a
pre commit fix
pz-max Jan 14, 2023
561ca55
remove empty space
pz-max Jan 14, 2023
2ff1f4b
try empty input
pz-max Jan 14, 2023
e0f05cc
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jan 14, 2023
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12 changes: 8 additions & 4 deletions Snakefile
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Original file line number Diff line number Diff line change
Expand Up @@ -51,25 +51,29 @@ wildcard_constraints:


rule clean:
run:
shell("snakemake -j 1 solve_all_networks --delete-all-output")
shell:
"snakemake -j 1 solve_all_networks --delete-all-output"


rule run_tests:
input:
"",
run:
import os

shell("snakemake --cores all build_test_configs")
directory = "test/tmp" # assign directory
for filename in os.scandir(directory): # iterate over files in that directory
for filename in os.scandir(
directory
): # iterate over files in that directory
if filename.is_file():
print(filename.path)
shell("cp {filename.path} config.yaml")
shell("snakemake --cores all solve_all_networks --forceall")
# shell("rm -r config.yaml")
print("Tests are successful.")



rule solve_all_networks:
input:
expand(
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