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88 Open 126 Closed
88 Open 126 Closed
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Issues list

ResourceWarning: files opened in readers.read_bed are never closed
#377 opened Apr 5, 2024 by Isy89
3
PyRanges read_bed produces wrong number of chromosomes when cast to categorical
#375 opened Feb 20, 2024 by mtekman
1
Unexpected behaviour with strandedness of pyranges object bug Something isn't working
#374 opened Jan 31, 2024 by kkuret
8
PyRanges.intersect - "invert=True" kwarg behavior
#370 opened Dec 8, 2023 by vincentczhou
1
pr.get_sequence may not be working?
#366 opened Nov 29, 2023 by brian-arnold
4
overlap default strandedness argument incorrectly documented
#364 opened Nov 6, 2023 by cmatKhan
count_overlaps documentation says it supports nb_cpu but it is not implemented
#363 opened Nov 1, 2023 by leetaiyi
1
count_overlaps causes overflow errors when number of reads are large
#361 opened Oct 25, 2023 by leetaiyi
1
when using .coverage: AttributeError: module 'numpy' has no attribute 'long'
#360 opened Oct 18, 2023 by brian-arnold
1
subtract does not respect strandedness default
#356 opened Oct 11, 2023 by michaelJwilson
Stable non-conflicting interface: v.1.0.0 enhancement New feature or request
#353 opened Oct 4, 2023 by marco-mariotti
1
Additional how-to-pages enhancement New feature or request
#351 opened Oct 2, 2023 by marco-mariotti
Future warning when trying to find intersection between non overlapping ranges
#345 opened Jul 7, 2023 by GH-MStamboulian
9
Code coverage badge for README.md enhancement New feature or request good first issue Good for newcomers
#332 opened May 19, 2023 by endrebak
bedtools fixed so we can test jaccard properly good first issue Good for newcomers
#324 opened May 18, 2023 by endrebak
Make example data its own package? enhancement New feature or request good first issue Good for newcomers
#322 opened May 17, 2023 by endrebak
1
Low efficiency on transcriptomes or fragmented genomes enhancement New feature or request
#317 opened May 16, 2023 by marco-mariotti
3
Add methods to reverse complement and translate nucleotides enhancement New feature or request
#316 opened May 16, 2023 by marco-mariotti
@marco-mariotti
Mapping between coordinates systems enhancement New feature or request
#315 opened May 16, 2023 by marco-mariotti
@marco-mariotti
2
Add slack argument to overlap, intersect, set_intersect, set_union enhancement New feature or request
#314 opened May 16, 2023 by marco-mariotti
@marco-mariotti
1
Improve API documentation enhancement New feature or request
#312 opened May 16, 2023 by marco-mariotti
@marco-mariotti
Add typing with mypy. enhancement New feature or request
#309 opened May 12, 2023 by endrebak
1
@endrebak
2
Remove CPU-flag?
#306 opened May 6, 2023 by endrebak
Implement correct but slow gtf/gff-reader to be used as backup.
#305 opened May 6, 2023 by endrebak
1
Remove support for int32 chromosome starts/ends?
#302 opened May 2, 2023 by endrebak
4
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