Merge pull request #192 from weikang9009/arraybug

fix ValueError: setting an array element with a sequence
pysal · May 30, 2023 · dad3f8a · dad3f8a
2 parents d8bb904 + 0d7f6fa
commit dad3f8a
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/giddy/markov.py b/giddy/markov.py
@@ -861,7 +861,7 @@ def S(self):
             for i, p in enumerate(self.P):
                 _S.append(steady_state(p))
             # if np.array(_S).dtype is np.dtype('O'):
-            self._S = np.asarray(_S)
+            self._S = np.asarray(_S, dtype=object)
         return self._S
 
     @property

diff --git a/giddy/sequence.py b/giddy/sequence.py
@@ -11,7 +11,6 @@
 import scipy.spatial.distance as d
 from .markov import Markov
 
-
 class Sequence(object):
     """
     Pairwise sequence analysis.
@@ -168,7 +167,7 @@ def __init__(self, y, subs_mat=None, dist_type=None, indel=None, cluster_type=No
         y_int = []
         for yi in y:
             y_int.append(list(map(self.label_dict.get, yi)))
-        y_int = np.array(y_int)
+        y_int = np.array(y_int, dtype=object)
 
         if subs_mat is None or indel is None:
             if dist_type is None: