Merge pull request #14 from TaylorOshan/submodule

Submodule

.gitignore

@@ -1,3 +1,27 @@
-*.py[cod]
 __pycache__
-.pytest_cache
+*.swp
+*.pyc
+.rope*
+.idea/
+notebooks/.ipynb_checkpoints/
+.DS_Store
+.ipynb_checkpoints/
+*.bak
+.eggs/
+*.egg-info/
+
+# Packages
+*.egg
+*.egg-info
+dist
+build
+eggs
+parts
+bin
+var
+sdist
+develop-eggs
+.installed.cfg
+lib
+lib64
+_build

.travis.yml

@@ -11,6 +11,13 @@ env:
   - PYSAL_PLUS=false
   - PYSAL_PLUS=true
 
+matrix:
+    allow_failures:
+        - python: 3.5
+          env: PYSAL_PYPI=false
+        - python: 3.6
+          env: PYSAL_PYPI=false
+
 before_install:
   - wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
   - chmod +x miniconda.sh
@@ -24,21 +31,27 @@ before_install:
 install:
   - conda install --yes pip
   - conda install --yes --file requirements.txt;
-  - conda install --yes nose
-  - pip install libpysal
-  - pip install spreg
-  - pip install spglm
-  - pip install -r requirements_dev.txt
+  - pip install https://github.com/pysal/splot/archive/master.zip
+  - pip install -r requirements_tests.txt
+  - if "$PYSAL_PYPI"; then
+        echo 'testing pypi libpysal spreg spglm' && pip install libpysal spreg spglm;
+    else
+        echo 'testing git libpysal spreg';
+        git clone https://github.com/pysal/libpysal.git; cd libpysal; pip install .; cd ../;
+        git clone https://github.com/pysal/spreg.git; cd spreg; pip install .; cd ../;
+        git clone https://github.com/pysal/spglm.git; cd spglm; pip install .; cd ../;
+    fi;
 
 script:
   - python setup.py sdist >/dev/null
-  - nosetests --with-coverage --cover-package=spint;
+  - python setup.py install
+  - nosetests --verbose --with-coverage --cover-package=spint;
 
 notifications:
     email:
         recipients:
             - tayoshan@gmail.com
-        on_change: always
+        on_change: change
         on_failure: always
 
 after_success:

MANIFEST.in

@@ -0,0 +1 @@
+include LICENSE.txt MANIFEST.in requirements_docs.txt requirements_tests.txt requirements.txt

doc/Makefile

@@ -0,0 +1,24 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS    =
+SPHINXBUILD   = sphinx-build
+SPHINXPROJ    = spint
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+clean:
+	rm -rf $(BUILDDIR)/*
+	rm -rf auto_examples/

doc/_static/pysal-styles.css

@@ -0,0 +1,73 @@
+/* Make thumbnails with equal heights */
+@media only screen and (min-width : 481px) {
+    .row.equal-height {
+        display: flex;
+        flex-wrap: wrap;
+    }
+    .row.equal-height > [class*='col-'] {
+        display: flex;
+        flex-direction: column;
+    }
+    .row.equal-height.row:after,
+    .row.equal-height.row:before {
+        display: flex;
+    }
+
+    .row.equal-height > [class*='col-'] > .thumbnail,
+    .row.equal-height > [class*='col-'] > .thumbnail > .caption {
+        display: flex;
+        flex: 1 0 auto;
+        flex-direction: column;
+    }
+    .row.equal-height > [class*='col-'] > .thumbnail > .caption > .flex-text {
+        flex-grow: 1;
+    }
+    .row.equal-height > [class*='col-'] > .thumbnail > img {
+        width: 100%;
+        height: 200px; /* force image's height */
+
+        /* force image fit inside it's "box" */
+        -webkit-object-fit: cover;
+           -moz-object-fit: cover;
+            -ms-object-fit: cover;
+             -o-object-fit: cover;
+                object-fit: cover;
+    }
+}
+
+.row.extra-bottom-padding{
+    margin-bottom: 20px;
+}
+
+
+.topnavicons {
+    margin-left: 10% !important;
+}
+
+.topnavicons li {
+    margin-left: 0px !important;
+    min-width: 100px;
+    text-align: center;
+}
+
+.topnavicons .thumbnail {
+    margin-right: 10px;
+    border: none;
+    box-shadow: none;
+    text-align: center;
+    font-size: 85%;
+    font-weight: bold;
+    line-height: 10px;
+    height: 100px;
+}
+
+.topnavicons .thumbnail img {
+    display: block;
+    margin-left: auto;
+    margin-right: auto;
+}
+
+
+/* Table with a scrollbar */
+.bodycontainer { max-height: 600px; width: 100%; margin: 0; overflow-y: auto; }
+.table-scrollable { margin: 0; padding: 0; }

doc/_static/references.bib

@@ -0,0 +1,20 @@
+%% This BibTeX bibliography file was created using BibDesk.
+%% http://bibdesk.sourceforge.net/
+
+%% Created for Wei Kang at 2018-08-05 16:12:26 -0700 
+
+
+%% Saved with string encoding Unicode (UTF-8) 
+
+
+
+@book{Press2007,
+	Address = {Cambridge},
+	Author = {Press, William H and Teukolsky, Saul A and Vetterling, William T and Flannery, Brian P},
+	Date-Added = {2018-06-12 22:53:57 +0000},
+	Date-Modified = {2018-06-12 22:54:05 +0000},
+	Edition = {3rd},
+	Keywords = {rank.py},
+	Publisher = {Cambridge Univ Pr},
+	Title = {Numerical recipes: the art of scientific computing},
+	Year = {2007}}

doc/api.rst

@@ -0,0 +1,30 @@
+.. _api_ref:
+
+.. currentmodule:: spint
+
+API reference
+=============
+
+.. _spint_api:
+
+Gravity-type spatial interaction models
+----------------------------------------
+
+.. autosummary::
+   :toctree: generated/
+
+    spint.gravity.BaseGravity
+    spint.gravity.Gravity
+    spint.gravity.Production
+    spint.gravity.Attraction
+    spint.gravity.Doubly
+
+Tests for overdispersion
+-------------------------
+
+.. autosummary::
+   :toctree: generated/
+
+    spint.dispersion.alpha_disp
+    spint.dispersion.phi_disp
+