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In [8]: sys.version Out[8]: '3.4.3 |Anaconda 2.3.0 (x86_64)| (default, Mar 6 2015, 12:07:41) \n[GCC 4.2.1 (Apple Inc. build 5577)]' In [10]: pysam.__version__ Out[10]: '0.8.4pre' In [11]: for f in pysam.FastxFile("ttt.fastq.gz"): ....: print(f) ....: print(f.name) ....: @b'M03018:26:000000000-AHU3W:1:1101:13741:1809' b'1:N:0:0 TTACTGTGGCCG' b'TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGCCGTTAAGTCAGTTGTGAAAGTTCGGGGCTCAACCCCGGAATTGCAGTTGAAACTGCCGGTCTTGAGTACACGCAGGGAAGCCTGAATTCATGGTGTAGCGGTGAAATGCTTAGATATCATGAAGACGACCGATCGCGAAGGCAGGTTTCCGGAGTGTAACTGACGCTGAGGCTCGAAAGTGCGGGTATCAAACA' + b'BCCCCBBBCFFFGGGGGGGGGGHGGGGGHFHHHHGEFGFFHHHGHGGGGGGGHGGGGGGGGGGHHHHHHHHHGHGGHHHHGGGGGGHGFHHGGGGGGGHHHGHHHHHFHHHHHHGGGGGHHGHHHHHGFC?DGGGGGGGGGGGGGGGGGGGGGGGGGGGFFFEFFFFFFFFFFFFFFFFFFFFFFFFD-@--A@DA-.E.AAFFFF0;>.-AFFFFBFBBF?ADD.:.AEFAD/A.FB09--DFFFFFBF.' b'M03018:26:000000000-AHU3W:1:1101:13741:1809'
pysam.Samfile works fine and was changed to strings. I'm not sure if this was overlooked during those changes or if this behavior is intentional.
pysam.Samfile
The text was updated successfully, but these errors were encountered:
Thanks, I will fix this.
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pysam.Samfile
works fine and was changed to strings. I'm not sure if this was overlooked during those changes or if this behavior is intentional.The text was updated successfully, but these errors were encountered: