Dependency:
python==3.7.12
numpy==1.21.5
torch==1.6.0+cu101, torchvision==0.7.0+cu101
pandas==1.1.0
Usage:
python test.py -test_fasta test.fasta -out_dir out
Notes:
-
The script test.py is used to predict m6Am sites from a given file with fasta format containing RNA sequences, in which potential modification sites within those sequences can be identified using sliding-window.
-
test_fasta: an input file containing query RNA sequences with fasta format.
-
out: the name of output directory.