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Refinement Module #387

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merged 60 commits into from Jul 31, 2021
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295d569
Remove print from MasterPattern (will revert when adding new function…
friedkitteh Feb 15, 2021
2edcf96
Inefficient xmap refinement method [skip CI]]
friedkitteh Feb 15, 2021
fead4da
Return task graph when not computing [skip CI]]
friedkitteh Feb 15, 2021
b7b41a7
Add methods to init [skip CI]]
friedkitteh Feb 17, 2021
d61f27b
Created methods for single pattern simulations [skip CI]]
friedkitteh Feb 17, 2021
e8408da
Merge branch 'master' into refinement
friedkitteh Feb 17, 2021
0e83f79
Reduce number of computations and use OpenCV to compare the patterns …
friedkitteh Feb 23, 2021
51cdc0c
Methods for PC and Orientation refinement [skip CI]
friedkitteh Mar 8, 2021
afb0e9c
Small changes [skip CI]
friedkitteh Mar 10, 2021
2d65146
More testing and Py-BOBYQA [skip CI]
friedkitteh Mar 17, 2021
00a54dd
Saving for history [skip CI]
friedkitteh Mar 22, 2021
174c3f8
Latest changes [skip CI]
friedkitteh Mar 24, 2021
0bd4894
Numba rework for orientation refinement
friedkitteh Apr 7, 2021
a3aeb09
Fix progress bar[skip CI]
friedkitteh Apr 7, 2021
faa5bc3
Full xmap refinement
friedkitteh Apr 10, 2021
66bf2d1
history commit
friedkitteh May 5, 2021
914d98b
Merge branch 'master' into refinement
friedkitteh May 5, 2021
1d61354
Removed old methods no longer in use
friedkitteh May 24, 2021
9f87325
Merge branch 'master' into refinement
friedkitteh May 24, 2021
cba46af
Various optimizer support with hard coded bounds
friedkitteh Jun 4, 2021
24d6a5a
Merge branch 'master' into refinement
friedkitteh Jun 4, 2021
5a87445
Removed comment
friedkitteh Jun 4, 2021
ff4fa3a
Support for user defined trust region
friedkitteh Jun 4, 2021
ec34f18
Added support for computing Dask Arrays
friedkitteh Jun 6, 2021
cb1112f
Fixed memory issues
friedkitteh Jun 7, 2021
02ab9a3
Removed comment
friedkitteh Jun 7, 2021
dc04087
Latest updates
friedkitteh Jun 20, 2021
f98b9d3
Fixed conflicts
friedkitteh Jun 24, 2021
b13e59d
Delete simple_refinement.py
friedkitteh Jun 24, 2021
b5ca86e
Merge branch 'refinement' of https://github.com/friedkitteh/kikuchipy…
friedkitteh Jun 24, 2021
678083c
Run black
friedkitteh Jun 24, 2021
9581f2e
Removed comment
friedkitteh Jun 24, 2021
5c494f6
Removed unused functions and added more documentation
friedkitteh Jun 26, 2021
d7800b8
Preparing to move into EBSD
friedkitteh Jun 26, 2021
1f7a6f0
Preparing to move into EBSD
friedkitteh Jun 26, 2021
2c6073c
Preparing to move into EBSD
friedkitteh Jun 26, 2021
65e54f7
Preparing to move into EBSD
friedkitteh Jun 26, 2021
3c344ef
Remove circular type hints
friedkitteh Jun 26, 2021
7086495
More documentation
friedkitteh Jun 30, 2021
2fc17ca
Merge branch 'master' into refinement
friedkitteh Jun 30, 2021
02b84e8
More documentation
friedkitteh Jul 1, 2021
cc7ce9c
Update __init__.py
friedkitteh Jul 1, 2021
b22534f
Update changelog, more documentation
friedkitteh Jul 2, 2021
7d37fce
New helper functions, more documentation
friedkitteh Jul 3, 2021
e9f2128
Fix changelog
friedkitteh Jul 3, 2021
cef9cac
Fix signals init
friedkitteh Jul 3, 2021
90a0051
Fix signals init
friedkitteh Jul 3, 2021
fc36e77
Some tests
friedkitteh Jul 4, 2021
c753a5f
More tests
friedkitteh Jul 4, 2021
ef4cf45
More tests
friedkitteh Jul 4, 2021
c3a7398
Even more tests
friedkitteh Jul 4, 2021
a9fff2a
Added .py_func in tests
friedkitteh Jul 4, 2021
6079822
LAST test
friedkitteh Jul 4, 2021
edf2527
Cleaned up a little
friedkitteh Jul 4, 2021
baeb5fa
Changes after first review #387
friedkitteh Jul 12, 2021
45badfe
Merge branch 'master' into refinement
friedkitteh Jul 12, 2021
7a62b34
Remove comment
friedkitteh Jul 12, 2021
e173ed0
Fix bugs
friedkitteh Jul 12, 2021
bf97c0a
Fix bugs + more tests
friedkitteh Jul 12, 2021
df3295e
Fix sneaky docstring
friedkitteh Jul 13, 2021
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12 changes: 12 additions & 0 deletions doc/bibliography.bib
Expand Up @@ -211,3 +211,15 @@ @article{wilkinson2006high
volume = {106},
year = {2006}
}

@article{pang2020optimization,
title={Global optimization for accurate determination of EBSD pattern centers},
volume={209},
ISSN={0304-3991},
DOI={10.1016/j.ultramic.2019.112876},
journal={Ultramicroscopy},
publisher={Ultramicroscopy},
author={Pang, Edward L. and Larsen, Peter M. and Schuh, Christopher A.},
year={2020},
pages={112876}
}
4 changes: 4 additions & 0 deletions doc/changelog.rst
Expand Up @@ -21,9 +21,13 @@ Unreleased
Contributors
------------
- Håkon Wiik Ånes
- Lars Andreas Hastad Lervik

Added
-----
- Refinement module for EBSD refinement. Allows for the refinement of
orientations and/or projection center estimates.
(`#387 <https://github.com/pyxem/kikuchipy/pull/387>`_)
- Sample tilt about RD can be passed as part of an EBSDDetector. This can be used when
projecting parts of master patterns onto a detector.
(`#381 <https://github.com/pyxem/kikuchipy/pull/381>`_)
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