Merge pull request #5 from qMRLab/docAutom

docAutom commit ccea5bd6454b1ca464bdd4686dcfbb5b368d7b74
qMRLab · Feb 27, 2021 · a4cf06e · a4cf06e
2 parents e1349ac + e6eb9b5
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diff --git a/latestGitInfo.json b/latestGitInfo.json
@@ -1,7 +1,7 @@
 {
-	"branch": "main",
-	"hash": "4113df099f3e2c4132a446c0404b71eeae099321",
-	"remote": "origin",
-	"url": "https:\/\/github.com\/qMRLab\/documentation.git",
-	"vertxt": [2,4,1]
+	"branch": "docAutom",
+	"hash": "e1349ac16b36b2cb10a287e342860ed4dedfd94f",
+	"remote": "",
+	"url": "",
+	"vertxt": [2,4,2]
 }
diff --git a/source/_static/b0_dem_batch.png b/source/_static/b0_dem_batch.png
diff --git a/source/_static/b0_dem_batch_01.png b/source/_static/b0_dem_batch_01.png
diff --git a/source/_static/b1_afi_batch.png b/source/_static/b1_afi_batch.png
diff --git a/source/_static/b1_afi_batch_01.png b/source/_static/b1_afi_batch_01.png
diff --git a/source/_static/b1_dam_batch.png b/source/_static/b1_dam_batch.png
diff --git a/source/_static/b1_dam_batch_01.png b/source/_static/b1_dam_batch_01.png
diff --git a/source/_static/charmed_batch.png b/source/_static/charmed_batch.png
diff --git a/source/_static/charmed_batch_01.png b/source/_static/charmed_batch_01.png
diff --git a/source/_static/charmed_batch_02.png b/source/_static/charmed_batch_02.png
diff --git a/source/_static/charmed_batch_03.png b/source/_static/charmed_batch_03.png
diff --git a/source/_static/charmed_batch_04.png b/source/_static/charmed_batch_04.png
diff --git a/source/_static/denoising_mppca_batch.png b/source/_static/denoising_mppca_batch.png
diff --git a/source/_static/denoising_mppca_batch_01.png b/source/_static/denoising_mppca_batch_01.png
diff --git a/source/_static/dti_batch.png b/source/_static/dti_batch.png
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diff --git a/source/_static/filter_map_batch.png b/source/_static/filter_map_batch.png
diff --git a/source/_static/filter_map_batch_01.png b/source/_static/filter_map_batch_01.png
diff --git a/source/_static/inversion_recovery_batch.png b/source/_static/inversion_recovery_batch.png
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diff --git a/source/_static/mono_t2_batch.png b/source/_static/mono_t2_batch.png
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diff --git a/source/_static/noddi_batch.png b/source/_static/noddi_batch.png
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diff --git a/source/_static/qmt_sirfse_batch_03.png b/source/_static/qmt_sirfse_batch_03.png
diff --git a/source/_static/qmt_sirfse_batch_04.png b/source/_static/qmt_sirfse_batch_04.png
diff --git a/source/_static/qmt_spgr_batch.png b/source/_static/qmt_spgr_batch.png
diff --git a/source/_static/qmt_spgr_batch_01.png b/source/_static/qmt_spgr_batch_01.png
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diff --git a/source/_static/qmt_spgr_batch_04.png b/source/_static/qmt_spgr_batch_04.png
diff --git a/source/_static/qsm_sb_batch.png b/source/_static/qsm_sb_batch.png
diff --git a/source/_static/qsm_sb_batch_01.png b/source/_static/qsm_sb_batch_01.png
diff --git a/source/_static/vfa_t1_batch.png b/source/_static/vfa_t1_batch.png
diff --git a/source/_static/vfa_t1_batch_01.png b/source/_static/vfa_t1_batch_01.png
diff --git a/source/_static/vfa_t1_batch_02.png b/source/_static/vfa_t1_batch_02.png
diff --git a/source/b0_dem_batch.rst b/source/b0_dem_batch.rst
diff --git a/source/b1_afi_batch.rst b/source/b1_afi_batch.rst
diff --git a/source/b1_dam_batch.rst b/source/b1_dam_batch.rst
diff --git a/source/charmed_batch.rst b/source/charmed_batch.rst
diff --git a/source/denoising_mppca_batch.rst b/source/denoising_mppca_batch.rst
diff --git a/source/dti_batch.rst b/source/dti_batch.rst
diff --git a/source/filter_map_batch.rst b/source/filter_map_batch.rst
diff --git a/source/inversion_recovery_batch.rst b/source/inversion_recovery_batch.rst
diff --git a/source/methods.rst b/source/methods.rst
@@ -1,133 +1,130 @@
 Methods available
 -------------------------------------------------------------------------------
 
-FieldMaps
+UnderDevelopment
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-.. toctree::
-	:maxdepth: 1
-
-	b1_afi_batch
+* Name your Model
 
+Processing
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	b1_dam_batch
+	filter_map_batch
 
+QSM
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	b0_dem_batch
+	qsm_sb_batch
 
-T2_relaxometry
+T1_relaxometry
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	mono_t2_batch
+	vfa_t1_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	mwf_batch
+	mtv_batch
 
-Processing
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	filter_map_batch
+	inversion_recovery_batch
 
-T1_relaxometry
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
 	mp2rage_batch
 
+FieldMaps
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	vfa_t1_batch
+	b1_afi_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	mtv_batch
+	b1_dam_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	inversion_recovery_batch
+	b0_dem_batch
 
-Magnetization_transfer
+Noise
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	qmt_bssfp_batch
+	noise_level_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	qmt_spgr_batch
+	denoising_mppca_batch
 
+T2_relaxometry
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	mt_sat_batch
+	mwf_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	mt_ratio_batch
+	mono_t2_batch
 
+Magnetization_transfer
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	qmt_sirfse_batch
+	qmt_bssfp_batch
 
-Diffusion
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	dti_batch
+	qmt_sirfse_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	amico_batch
+	mt_sat_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	noddi_batch
+	qmt_spgr_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	charmed_batch
+	mt_ratio_batch
 
-QSM
+Diffusion
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	qsm_sb_batch
-
-UnderDevelopment
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-* Name your Model
+	dti_batch
 
-Noise
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 .. toctree::
 	:maxdepth: 1
 
-	denoising_mppca_batch
+	noddi_batch
 
 .. toctree::
 	:maxdepth: 1
 
-	noise_level_batch
+	charmed_batch
+
+* amico:   Accelerated Microstructure Imaging via Convex Optimization
 
diff --git a/source/mono_t2_batch.rst b/source/mono_t2_batch.rst
diff --git a/source/mp2rage_batch.rst b/source/mp2rage_batch.rst
diff --git a/source/mt_ratio_batch.rst b/source/mt_ratio_batch.rst
diff --git a/source/mt_sat_batch.rst b/source/mt_sat_batch.rst
diff --git a/source/mtv_batch.rst b/source/mtv_batch.rst
diff --git a/source/mwf_batch.rst b/source/mwf_batch.rst
diff --git a/source/noddi_batch.rst b/source/noddi_batch.rst
diff --git a/source/noise_level_batch.rst b/source/noise_level_batch.rst
diff --git a/source/qmt_bssfp_batch.rst b/source/qmt_bssfp_batch.rst
diff --git a/source/qmt_sirfse_batch.rst b/source/qmt_sirfse_batch.rst
diff --git a/source/qmt_spgr_batch.rst b/source/qmt_spgr_batch.rst
diff --git a/source/qsm_sb_batch.rst b/source/qsm_sb_batch.rst
diff --git a/source/vfa_t1_batch.rst b/source/vfa_t1_batch.rst