Version 1.14.0

prepare release (#112)

* add error handling via email for attachment upload (#111)

* update readme for attachment upload

Patch release 1.13.1

• Fixes minor issue with simultaneous registration of fastq and vcf files
• Fixes debug prints causing errors due to concatenation

Release 1.13.0

• Enables registration of new version of nanopore data including extra basecalling folder
• Fixes mistake in readme for imaging data registration
• Makes imaging data registration error handling compatible with old python/jython versions

Minor release 1.12.0

Logs duplicate MTB dataset registration but does not cause manual intervention anymore.

Chocolate Macaron

Prepare release 1.11.0 (#96)

* change ms conversion server

* remove some log files dependent on origin lab (#95)

Co-authored-by: Tobias Koch <KochTobi@users.noreply.github.com>

* handle data without unclassified reads

* Update CL (#92)

Co-authored-by: Tobias Koch <KochTobi@users.noreply.github.com>
Co-authored-by: Sven F <9976560+sven1103@users.noreply.github.com>

The dark knight returns

• Provides new ETL for MTB project data that are not supposed to be stored in QUK17 (#89)
• Allow multiple sequencing lanes for MTB data

The dark ETL rises

• Provides new ETL routine written in Java, that will replace all Jython scripts at some point (#85)
• Support for nf-core pipeline result registration (#85)
• Provides metadata validation for imaging data (OMERO etl). (#85)

Spring Roll

• Add example Java dropbox

From 1.7.0:

• Provides fully tested functionality to register generic imaging data, with OMERO server support (v5.4.10).
• Uses an omero-importer-cli (with Bio-formats) for image file registration into an OMERO server instance
• Uses an initial version of the openBIS-OMERO metadata model

Blue Moon

• Fix for workflow result registration: fetch sample by identifier instead of search service
• Retry sample tracking updates twice and log failures that occur

Yellow Autumn

• New maintenance task: update missing checksum once, after dss starts.
• Fix for nanopore registration: rename folders for pooling case
• Fix for experiment update: force identifier into a string to support v3 API objects