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Added 6 files to support testing filter_tree.py.

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1 parent def41f1 commit 7384c60075007135173b8cebc456dd510b2cd055 @wdwvt1 wdwvt1 committed Oct 16, 2012
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24 filter_tree/fast_f.fna
@@ -0,0 +1,24 @@
+>node_388 length=250 xy=1766_0111 region=1 run=R_2008_12_09_13_51_01_
+ACAGAGTCGGCTCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGG
+CCGTTTACCCTCTCAGGCCGGCTACGCATCATCGCCTTGGTGGGCCGTTACCTCACCAAC
+TAGCTAATGCGCCGCAGGTCCATCCATGTTCACGCCTTGATGGGCGCTTTAATATACTGA
+GCATGCGCTCTGTATACCTATCCGGTTTTAGCTACCGTTTCCAGCAGTTATCCCGGACAC
+ATGGGCTAGG
+>node_355 length=276 xy=1719_1463 region=1 run=R_2008_12_09_13_51_01_
+ACAGAGTCGGCTCATGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG
+GGGCCTTCCTCTCAGAACCCCTATCCATCGAAGGCTTGGTGGGCCGTTACCCCGCCAACA
+ACCTAATGGAACGCATCCCCATCGATGACCGAAGTTCTTTAATAGTTCTACCATGCGGAA
+GAACTATGCCATCGGGTATTAATCTTTCTTTCGAAAGGCTATCCCCGAGTCATCGGCAGG
+TTGGATACGTGTTACTCACCCGTGCGCCGGTCGCCA
+>node_29 length=244 xy=1692_3531 region=1 run=R_2008_12_09_13_51_01_
+AGCACGAGCCTACATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGG
+CCGATCAGTCTCTTAACTCGGCTATGCATCATTGCCTTGGTAAGCCGTTACCTTACCAAC
+TAGCTAATGCACCGCAGGTCCATCCAAGAGTGATAGCAGAACCATCTTTCAAACTCTAGA
+CATGCGTCTAGTGTTGTTATCCGGTATTAGCATCTGTTTCCAGGTGTTATCCCAGTCTCT
+TGGG
+>node_70 length=252 xy=1278_0245 region=1 run=R_2008_12_09_13_51_01_
+ACCAGCGACTAGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGG
+CCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTGAGCCGTTACCTCACCAAC
+TATCTAATCAGACGCGAGCCCATCTTTCAGCGGATTGCTCCTTTGGTATTCCGGCGATGC
+CGCCAAAATCATTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTGAAAGGC
+AGGTTGCTCACG
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1 filter_tree/negated.tre
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+((((('node_814':0.03867,(('node_817':0.01724,('node_819':0.02669,'node_820':0.00014)'node_818':0.00422)'node_816':0.01019,('node_822':0.00516,'node_823':0.00502)'node_821':0.02157)'node_815':0.00015)'node_813':0.01312,('node_825':0.04864,((('node_829':0.00901,('node_831':0.06254,'node_832':0.01165)'node_830':0.01766)'node_828':0.0171,'node_833':0.01655)'node_827':0.00016,'node_834':0.00015)'node_826':0.00928)'node_824':0.00636)'node_812':0.01044,(((((('node_708':0.02551,('node_710':0.02676,'node_711':0.03946)'node_709':0.00136)'node_707':0.00588,(((('node_716':0.00015,(('node_719':0.01639,'node_720':0.01649)'node_718':0.01074,'node_721':0.0162)'node_717':0.00016)'node_715':0.00529,'node_722':0.00519)'node_714':0.00015,('node_724':0.01531,'node_725':0.02714)'node_723':0.00041)'node_713':0.00505,('node_727':0.0051,('node_729':0.02234,'node_730':0.03943)'node_728':0.01609)'node_726':0.01086)'node_712':0.01046)'node_706':0.00506,('node_732':0.02734,('node_734':0.02206,'node_735':0.03351)'node_733':0.00412)'node_731':0.01095)'node_705':0.01075,(('node_738':0.01954,('node_740':0.00015,'node_741':0.01579)'node_739':0.00512)'node_737':0.00644,((('node_745':0.00513,'node_746':0.01096)'node_744':0.01062,('node_748':0.01086,('node_750':0.00014,'node_751':0.05119)'node_749':0.01048)'node_747':0.01611)'node_743':0.01052,('node_753':0.00016,(('node_756':0.01672,'node_757':0.01628)'node_755':0.00525,((((('node_763':0.01546,('node_765':0.03394,'node_766':0.01126)'node_764':0.01041)'node_762':0.00609,('node_768':0.01055,'node_769':0.0162)'node_767':0.0052)'node_761':0.0052,('node_771':0.05971,('node_773':0.01435,'node_774':0.0377)'node_772':0.00763)'node_770':0.0161)'node_760':0.00014,('node_776':0.03413,'node_777':0.01612)'node_775':0.00014)'node_759':0.00015,('node_779':0.00015,'node_780':0.01556)'node_778':0.02642)'node_758':0.00526)'node_754':0.01027)'node_752':0.01031)'node_742':0.00014)'node_736':0.01018)'node_704':0.01626,((('node_784':0.00831,('node_786':0.03114,'node_787':0.01229)'node_785':0.02187)'node_783':0.01264,(((('node_792':0.01585,('node_794':0.00016,'node_795':0.03721)'node_793':0.03778)'node_791':0.00488,('node_797':0.00516,('node_799':0.00527,('node_801':0.01873,('node_803':0.02977,'node_804':0.0106)'node_802':0.01443)'node_800':0.00831)'node_798':0.00526)'node_796':0.00519)'node_790':0.00503,('node_806':0.01023,'node_807':0.00515)'node_805':0.00015)'node_789':0.01576,'node_808':0.01626)'node_788':0.00507)'node_782':0.00518,('node_810':0.02794,'node_811':0.00014)'node_809':0.00511)'node_781':0.0159)'node_703':0.02029,((('node_616':0.01408,('node_618':0.04382,'node_619':0.00014)'node_617':0.09125)'node_615':0.0064,(((((((('node_628':0.00015,'node_629':0.00525)'node_627':0.00517,('node_631':0.01105,'node_632':0.04818)'node_630':0.00015)'node_626':0.01082,('node_634':0.00016,('node_636':0.01642,'node_637':0.00015)'node_635':0.01076)'node_633':0.0108)'node_625':0.00016,('node_639':0.0345,(('node_642':0.05824,('node_644':0.00016,('node_646':0.06962,('node_648':0.06024,((('node_652':0.08004,('node_654':0.02469,'node_655':0.06081)'node_653':0.04574)'node_651':0.01243,('node_657':0.06066,(('node_660':0.00016,(('node_663':0.00534,'node_664':0.03876)'node_662':0.01609,('node_666':0.03389,('node_668':0.01056,('node_670':0.0222,'node_671':0.02757)'node_669':0.00014)'node_667':0.02803)'node_665':0.00533)'node_661':0.01063)'node_659':0.00638,'node_672':0.0208)'node_658':0.01817)'node_656':0.00767)'node_650':0.0178,('node_674':0.03567,'node_675':0.00245)'node_673':0.05918)'node_649':0.0159)'node_647':0.01215)'node_645':0.00569)'node_643':0.02296)'node_641':0.00015,('node_677':0.03489,'node_678':0.01051)'node_676':0.01719)'node_640':0.01736)'node_638':0.0105)'node_624':0.01842,(('node_681':0.01118,'node_682':0.02795)'node_680':0.02231,('node_684':0.01105,('node_686':0.01155,('node_688':0.00015,'node_689':0.01644)'node_687':0.02223)'node_685':0.02512)'node_683':0.00599)'node_679':0.00334)'node_623':0.0329,'node_690':0.01969)'node_622':0.00942,'node_691':0.04451)'node_621':0.02052,('node_693':0.0403,('node_695':0.01161,(('node_698':0.00837,'node_699':0.08317)'node_697':0.11513,('node_701':0.02789,'node_702':0.02676)'node_700':0.03037)'node_696':0.03986)'node_694':0.0309)'node_692':0.0182)'node_620':0.03291)'node_614':0.03269,((((((('node_419':0.00016,((('node_423':0.02613,('node_425':0.02876,'node_426':0.14721)'node_424':0.02147)'node_422':0.02148,(((('node_431':0.00015,('node_433':0.02264,('node_435':0.0107,'node_436':0.01132)'node_434':0.01097)'node_432':0.01705)'node_430':0.19154,('node_438':0.00205,('node_440':0.01891,('node_442':0.00015,'node_443':0.02891)'node_441':0.01454)'node_439':0.09463)'node_437':0.1571)'node_429':0.07516,('node_445':0.0258,('node_447':0.00015,'node_448':0.03191)'node_446':0.04417)'node_444':0.0125)'node_428':0.03328,((('node_452':0.05516,('node_454':0.05657,'node_455':0.0195)'node_453':0.01096)'node_451':0.00115,(('node_458':0.00529,'node_459':0.05507)'node_457':0.02149,('node_461':0.09547,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1 filter_tree/pruned.tre
@@ -0,0 +1 @@
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1 filter_tree/pruned_fasta.tre
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View
1 filter_tree/rep_seqs.tre
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View
200 filter_tree/tips_to_keep.txt
@@ -0,0 +1,200 @@
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