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IMP: da-plots should take FeatureData[Taxonomy] as optional input #113

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gregcaporaso opened this issue Mar 10, 2023 · 2 comments
Open

IMP: da-plots should take FeatureData[Taxonomy] as optional input #113

gregcaporaso opened this issue Mar 10, 2023 · 2 comments

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@gregcaporaso
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gregcaporaso commented Mar 10, 2023 •
edited

I received a feature request for full taxonomic annotation in the da-plots visualization without collapsing the feature table, which makes sense for maximizing resolution. We should add support for providing FeatureData[Taxonomy] to provide annotation of features in the viz (I imagine this would just show up in the tool tip, for readability - EDIT: After this PR is merged, full feature annotations could be included on y-axis labels, if that's desired).
@colinbrislawn
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Forums x-ref 26974

@lizgehret lizgehret changed the title da-plots should take FeatureData[Taxonomy] as optional input IMP: da-plots should take FeatureData[Taxonomy] as optional input Feb 13, 2024
@colinbrislawn
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colinbrislawn commented Apr 19, 2024 •
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Current workaround is to run qiime taxa collapse first as shown at the very bottom of this page.
https://docs.qiime2.org/2024.2/tutorials/moving-pictures/#differential-abundance-testing-with-ancom-bc

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@gregcaporaso @colinbrislawn