Pinned repositories

  1. qiime2

    Official repository for the QIIME 2 framework.

    Python 120 78

  2. docs

    Source repository for https://docs.qiime2.org

    Python 3 25

  3. q2cli

    Command line interface for QIIME 2

    Python 10 15

  • Source repository for https://docs.qiime2.org

    Python 3 25 BSD-3-Clause 3 issues need help Updated Oct 20, 2018
  • A QIIME 2 plugin wrapper for the SHOGUN shallow shotgun sequencing taxonomy profiler

    Python 2 BSD-3-Clause Updated Oct 19, 2018
  • Data for the primary QIIME 2 paper.

    BSD-3-Clause Updated Oct 18, 2018
  • QIIME 2 plugin wrapping DADA2

    Python 6 11 BSD-3-Clause Updated Oct 18, 2018
  • Developer documentation for QIIME 2

    Python 2 6 BSD-3-Clause 1 issue needs help Updated Oct 18, 2018
  • Phylogenetic reconstruction, and operations on phylogenetic trees.

    Python 3 12 BSD-3-Clause Updated Oct 16, 2018
  • QIIME 2 plugin for paired sample comparisons

    Python 3 9 BSD-3-Clause 2 issues need help Updated Oct 12, 2018
  • QIIME 2 plugin for machine learning prediction of sample data.

    Python 1 10 BSD-3-Clause Updated Oct 10, 2018
  • Python 4 Updated Oct 9, 2018
  • 1 5 Updated Oct 5, 2018
  • Python 1 3 BSD-3-Clause Updated Oct 5, 2018
  • Definitions of common QIIME 2 types.

    Python 5 21 BSD-3-Clause 3 issues need help Updated Oct 5, 2018
  • Python 1 4 BSD-3-Clause Updated Oct 5, 2018
  • Python 1 12 BSD-3-Clause 1 issue needs help Updated Oct 4, 2018
  • QIIME 2 plugin supporting operations on feature tables.

    Python 1 19 BSD-3-Clause 3 issues need help Updated Oct 4, 2018
  • Prototype graphical user interface for QIIME 2

    JavaScript 9 11 BSD-3-Clause Updated Oct 3, 2018
  • QIIME 2 plugin supporting taxonomic classification

    Python 1 13 BSD-3-Clause 1 issue needs help Updated Oct 2, 2018
  • Command line interface for QIIME 2

    Python 10 15 BSD-3-Clause Updated Oct 1, 2018
  • Python 3 22 BSD-3-Clause 1 issue needs help Updated Sep 28, 2018
  • Python 2 5 BSD-3-Clause 1 issue needs help Updated Sep 27, 2018
  • QIIME2 plugin for Gneiss

    Python 11 BSD-3-Clause 2 issues need help Updated Sep 27, 2018
  • Design template package for QIIME 2 Plugins

    Python 3 10 BSD-3-Clause Updated Sep 27, 2018
  • Python 1 10 BSD-3-Clause 2 issues need help Updated Sep 27, 2018
  • Support for multiple sequence alignment in QIIME 2.

    Jupyter Notebook 1 12 BSD-3-Clause Updated Sep 27, 2018
  • Python 1 10 BSD-3-Clause 1 issue needs help Updated Sep 27, 2018
  • A QIIME 2 plugin for quality control of sequence and feature data

    Python 1 7 BSD-3-Clause Updated Sep 27, 2018
  • Quality filtering for QIIME2

    Python 9 BSD-3-Clause Updated Sep 27, 2018
  • vsearch plugin for QIIME 2

    Python 2 8 BSD-3-Clause Updated Sep 27, 2018
  • Map sequence barcodes to sample identifiers.

    Python 1 11 BSD-3-Clause Updated Sep 27, 2018
  • QIIME2 plugin for compositional data analysis

    Python 1 11 BSD-3-Clause 1 issue needs help Updated Sep 27, 2018