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Normalization not applied to BIOMV210Format files on import #145

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thermokarst opened this issue Sep 5, 2017 · 0 comments
Open

Normalization not applied to BIOMV210Format files on import #145

thermokarst opened this issue Sep 5, 2017 · 0 comments
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type:bug Something is wrong.

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@thermokarst
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thermokarst commented Sep 5, 2017

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This is because importing data that share the same artifact_format as the semantic type enjoy transformerless-imports. While this is generally a convenience for developers, it makes things a pain when we need to apply additional transforms (see: feature table munging in this plugin, which strips out biom metadata, among other things). Not sure if this needs to be solved more generally in the framework, or if we can just define a BIOMV210Format -> BIOMV210Format transformer here.

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This issue came up on the forum.

@thermokarst thermokarst added the type:bug Something is wrong. label Sep 5, 2017
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