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adding @AnjaliVanamala suggestion
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antgonza committed Jul 7, 2021
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How to convert Qiita files to QIIME2 artifacts?
-----------------------------------------------

Please visit the `Transferring Qiita Artifacts to Qiime2 Tutorial <https://forum.qiime2.org/t/transferring-qiita-artifacts-to-qiime2/4790>`__
in the `QIIME2 forum <https://forum.qiime2.org>`__. Note that all feature table (bioms) and analytical steps will generate qza and qzv, which are QIIME2 artifacts.
As a reminder, Qiita and QIIME 2 artifacts are similar as they encapsulate multiple files. However, a big
difference is that QIIME 2 only has 2 main artifact types: QZA (all kinds of files) and QZV (visualization).

Here is quick reference conversion table, but please visit the `Transferring Qiita Artifacts to Qiime2 Tutorial <https://forum.qiime2.org/t/transferring-qiita-artifacts-to-qiime2/4790>`__
in the `QIIME2 forum <https://forum.qiime2.org>`__. for more details:

+----------------------------+----------------------------------------------------------------------+
| Qiita | QIIME 2 |
+============================+======================================================================+
| beta diversity .tsv | DistanceMatrix (QZA) |
+----------------------------+----------------------------------------------------------------------+
| FASTA sequence files | FeatureData[Taxonomy | Sequence] (QZA) |
+----------------------------+----------------------------------------------------------------------+
| .biom tables | FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] (QZA) |
+----------------------------+----------------------------------------------------------------------+
| ordination .txt | PCoAResults (QZA) |
+----------------------------+----------------------------------------------------------------------+
| phylogentic tree .txt | Phylogeny[Rooted] (QZA) |
+----------------------------+----------------------------------------------------------------------+
| alpha diversity .tsv | SampleData[AlphaDiversity] (QZA) |
+----------------------------+----------------------------------------------------------------------+
| taxonomic classifier | Taxonomic Classifier (QZA) |
+----------------------------+----------------------------------------------------------------------+
| all QIIME 2 visualizations | Visualization (QZV) |
+----------------------------+----------------------------------------------------------------------+

Note that all feature table (bioms) and analytical steps will generate QZA and QZV, which are native QIIME2 artifacts.


How to add extra files to a Qiita study?
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