clean docs

qiita_pet/support_files/doc/source/processingdata/processing-recommendations.rst

@@ -77,6 +77,12 @@ subsequent meta-analyses. We currently provide the several options for your conv
 - auto-detect adapters and **rat** + phix filtering. Includes Norway rat (*Rattus norvegicus*) reference `GCF_000001895.5 (Rnor_6.0) <https://www.ncbi.nlm.nih.gov/data-hub/genome/GCF_000001895.5/>`_. `GCF_000001895.5 fna <https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/895/GCA_000001895.4_Rnor_6.0/GCA_000001895.4_Rnor_6.0_genomic.fna.gz>`_
 - auto-detect adapters only filtering. Only includes the two adapter sequences noted above.
 
+For more information about the versions in this plugin, visit:
+
+.. toctree::
+
+   qp-fastp-minimap2.rst
+
 Note that the command produces up to 6 output artifacts based on the aligner and database selected:
 
 - Alignment Profile: contains the raw alignment file and the no rank classification BIOM table

qiita_pet/support_files/doc/source/processingdata/qp-fastp-minimap2.rst

@@ -1,5 +1,5 @@
-Adapter and host filtering v2023.12
-===================================
+Adapter and host filtering
+==========================
 
 At the end of August 2023, we discovered that the parameters used by
 qp-fastp-minimap2 did not trigger application of adapter filtering. By default,
@@ -32,4 +32,6 @@ The fastp autodetection is compile-time limited to `the first 256k sequences <ht
 Because of this, we opted for a more conservative approach of not relying on
 autodetection and instead we now test all adapters that fastp is aware of. Specifically,
 we now provide fastp a known adapters FASTA which is a serialized representation
-of their `known adapter list <https://github.com/OpenGene/fastp/blob/7784d047fdf0a8df4211967156f5c97920c6d2e8/src/knownadapters.h#L11>`.
+of their `known adapter list <https://github.com/OpenGene/fastp/blob/7784d047fdf0a8df4211967156f5c97920c6d2e8/src/knownadapters.h#L11>`_.
+
+The new command is named: `Adapter and host filtering v2023.12`.