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A collection of bioinformatics tools for use with galaxy written at Quadram Institute
Align sequences to detect the variable regions they span
Comparative TraDIS analysis
Scripts for replication of the ribosomal RNA manuscript (biorxiv2019)
Order and orientation of complete bacterial genomes
C library with lowlevel functions used by other software
Fast tool for sequence related tasks
FOSS utilities used by Lotus 16S Suite
Supertree estimation from gene trees to species trees, using matrix representation with distances.
Method for 16S analysis for the project " Mucin-derived sialic acids: the missing link in the cross-talk between gut bacteria and the brain?"
K-mer spectrum analysis for Streptococcus genus to differentiate Strep pneumonia and other Streptococcus spp
Predict plasmids from uncorrected long read data
A script for downloading complete sequences from genbank and make blast database for use with prokka
Cookiecutter template for a Python package.
Support material for the MSCA RISE "METABLE" project
Utilities to be used with NBI HPC
Predict MLST directly from uncorrected long reads
Protocol for the analysis of RNA-seq data for the ESCAPE study