MeTABLE.eu Project

Repository of tools developed for the MeTABLE Horizon 2020 EU Project 🇪🇺.

Web server

Code

• de novo assembly
• BLAST interface
• Annotation interface

Bibliography

• Magoc T. and Salzberg S. FLASH: Fast length adjustment of short reads to improve genome assemblies. (2011) Bioinformatics.
• Seemann T. Prokka: Rapid Prokaryotic Genome Annotation (2014) Bioinformatics.
• Blanco-Míguez A. et al. BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results (2018) PLoS ONE.
• Bankevich A. et. al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing (2012) Journal of Computational Biology.
• Margulies, M. et al. Genome sequencing in microfabricated high-density picolitre reactors (2005) Nature.
• Birolo G. and Telatin A. covtobed: a simple and fast tool to extract coverage tracks from BAM files (2020) Journal of Open Source Software.