Debug missing replicate from tracer plot

quanted · May 23, 2024 · 657f142 · 657f142
1 parent cffd487
commit 657f142
Showing 1 changed file with 4 additions and 15 deletions.
diff --git a/app/ms1/WebApp_plotter.py b/app/ms1/WebApp_plotter.py
@@ -535,7 +535,10 @@ def make_seq_scatter(
         # check if there is a sequence csv file
         if seq_csv is None:
             # Sort dataframe columns alphabetically prior to parsing headers
-            df_in = df_in.reindex(sorted(df_in.columns), axis=1)
+            df_in = df_in.reindex(sorted(df_in.columns), axis=1)  # Remove sorting to
+            df_in = df_in[
+                ["Mass"] + [col for col in df_in.columns if col != "Mass"]
+            ]  # Move mass column to front of dataframe; if a sample replicate is the first column when parsing headers it loses that replicate from the group
 
             # Debug_list
             debug_list.append("After sorting: df_in columns")
@@ -571,12 +574,6 @@ def make_seq_scatter(
                 )
             ]
 
-            # Debug_list
-            debug_list.append(
-                "Abundance after removing specific prefix-matching columns"
-            )
-            debug_list.append(abundance)
-
             df_loc_seq = pd.DataFrame()
             df_loc_seq["Sample Sequence"] = abundance
             order_samples = False
@@ -678,14 +675,6 @@ def make_seq_scatter(
 
             df = df_in[abundance].copy()
 
-            # Debug_list
-            # debug_list.append("Second abundance")
-            # debug_list.append(abundance)
-
-        # Debug_list
-        # debug_list.append("Clean the data df columns")
-        # debug_list.append(df.columns.values)
-
         # our list of final chemical names with appropriate capitalization
         chemical_names = df_in["Chemical_Name"]