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Native Julia engine based on QuartoNotebookRunner.jl #8645

Merged
merged 107 commits into from
Apr 9, 2024
Merged

Native Julia engine based on QuartoNotebookRunner.jl #8645

merged 107 commits into from
Apr 9, 2024

Commits on Jan 23, 2024

  1. add basic scaffolding to use QuartoNotebookRunner for running Julia q… 

    …md files
    @jkrumbiegel
    jkrumbiegel committed Jan 23, 2024
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  2. change default content to julia

    @jkrumbiegel
    jkrumbiegel committed Jan 23, 2024
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  3. add note

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    jkrumbiegel committed Jan 23, 2024
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  4. simply julia code

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    jkrumbiegel committed Jan 23, 2024
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Commits on Jan 24, 2024

  1. first working version with transport file

    @jkrumbiegel
    jkrumbiegel committed Jan 24, 2024
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  2. fix julia server bug by using Deno.Command

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    jkrumbiegel committed Jan 24, 2024
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  3. add oneShot option to exec options

    @jkrumbiegel
    jkrumbiegel committed Jan 24, 2024
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  4. replace console.log with trace

    @jkrumbiegel
    jkrumbiegel committed Jan 24, 2024
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Commits on Jan 25, 2024

  1. cleanups

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    jkrumbiegel committed Jan 25, 2024
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  2. restart daemon if requested

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    jkrumbiegel committed Jan 25, 2024
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  3. move sleeps

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    jkrumbiegel committed Jan 25, 2024
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  4. use custom env for server

    @jkrumbiegel
    jkrumbiegel committed Jan 25, 2024
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  5. add notice when server starts

    @jkrumbiegel
    jkrumbiegel committed Jan 25, 2024
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  6. also check that julia version in manifest matches

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    jkrumbiegel committed Jan 25, 2024
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Commits on Feb 1, 2024

  1. allow override of julia binary via QUARTO_JULIA env var

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    jkrumbiegel committed Feb 1, 2024
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Commits on Feb 5, 2024

  1. bump quartonotebookrunner

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  2. send options along with "run" command

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Commits on Feb 26, 2024

  1. Merge branch 'main' into jk/quartonotebookrunner

    @jkrumbiegel
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  2. register julia engine again

    @jkrumbiegel
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  3. reject if notebook exec returns undefined

    @jkrumbiegel
    jkrumbiegel committed Feb 26, 2024
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  4. bump QuartoNotebookRunner

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    jkrumbiegel committed Feb 26, 2024
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Commits on Feb 27, 2024

  1. remove commented out code

    @jkrumbiegel
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  2. bump QuartoNotebookRunner to 0.3.2

    @jkrumbiegel
    jkrumbiegel committed Feb 27, 2024
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  3. let connection timeout if isready isn't returned quickly enough

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    jkrumbiegel committed Feb 27, 2024
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  4. formatting

    @jkrumbiegel
    jkrumbiegel committed Feb 27, 2024
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  5. don't claim julia automatically

    @jkrumbiegel
    jkrumbiegel committed Feb 27, 2024
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  6. add julia engine test

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    jkrumbiegel committed Feb 27, 2024
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  7. timeout after 3000 ms

    @jkrumbiegel
    jkrumbiegel committed Feb 27, 2024
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  8. take out info as tests expect no output

    @jkrumbiegel
    jkrumbiegel committed Feb 27, 2024
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  9. use jupyter file for old test

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    jkrumbiegel committed Feb 27, 2024
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  10. don't always trace timeout message

    @jkrumbiegel
    jkrumbiegel committed Feb 27, 2024
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Commits on Feb 28, 2024

  1. re-add native julia commonmark smoke test

    @jkrumbiegel
    jkrumbiegel committed Feb 28, 2024
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  2. add native julia crossref test

    @jkrumbiegel
    jkrumbiegel committed Feb 28, 2024
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  3. rethrow error if server connection fails to establish

    @jkrumbiegel
    jkrumbiegel committed Feb 28, 2024
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  4. try if 30 seconds timeout removes the timeout errors

    @jkrumbiegel
    jkrumbiegel committed Feb 28, 2024
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  5. try if specifying localhost makes a connection difference

    @jkrumbiegel
    jkrumbiegel committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. remove localhost again

    @jkrumbiegel
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  2. change timeout back to 3 seconds

    @jkrumbiegel
    jkrumbiegel committed Feb 29, 2024
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  3. clarify command creation code and add console.log for CI check

    @jkrumbiegel
    jkrumbiegel committed Feb 29, 2024
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  4. remove logging, not visible in CI

    @jkrumbiegel
    jkrumbiegel committed Feb 29, 2024
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  5. make server process detached through julia indirection

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Commits on Mar 1, 2024

  1. look at lsof output in CI

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Commits on Mar 4, 2024

  1. add debug log level

    @jkrumbiegel
    jkrumbiegel committed Mar 4, 2024
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  2. run only linux

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  3. try tmate session for debugging

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    jkrumbiegel committed Mar 4, 2024
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  4. move session before failure

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    jkrumbiegel committed Mar 4, 2024
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  5. increase timeout to 10 seconds

    @jkrumbiegel
    jkrumbiegel committed Mar 4, 2024
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  6. try warming up the julia native server before tests run

    @jkrumbiegel
    jkrumbiegel committed Mar 4, 2024
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  7. continue on error

    @jkrumbiegel
    jkrumbiegel committed Mar 4, 2024
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  8. remove lsof used for debugging

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    jkrumbiegel committed Mar 4, 2024
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  9. format timeout error better

    @jkrumbiegel
    jkrumbiegel committed Mar 4, 2024
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  10. bump quartonotebookrunner version to 0.4

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    jkrumbiegel committed Mar 4, 2024
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  11. add julianative subfig test

    @jkrumbiegel
    jkrumbiegel committed Mar 4, 2024
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  12. rename files consistently

    @jkrumbiegel
    jkrumbiegel committed Mar 4, 2024
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  13. take out warmup again

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    jkrumbiegel committed Mar 4, 2024
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  14. add test connection before writing transport file

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    jkrumbiegel committed Mar 4, 2024
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  15. put windows back

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Commits on Mar 5, 2024

  1. add tmate action and only test windows

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  2. use command.spawn and log transport file accesses

    @jkrumbiegel
    jkrumbiegel committed Mar 5, 2024
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  3. remove tmate session

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  4. call exit manually to see if that truly stops the spawned process

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  5. try starting the detached julia the way that detached python is start… 

    …ed, too
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  6. import re

    @jkrumbiegel
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  7. delete unnecessary lines

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    jkrumbiegel committed Mar 5, 2024
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  8. delete accidental double Popen

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  9. try detached julia with devnull'ed file descriptors

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  10. use uv_unref on the process handle

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Commits on Mar 6, 2024

  1. remove uv_unref again, didn't work

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  2. try spawning julia server through powershell on windows

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  3. fix window style

    @jkrumbiegel
    jkrumbiegel committed Mar 6, 2024
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  4. add explanatory comment

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    jkrumbiegel committed Mar 6, 2024
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  5. remove printouts

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  6. use outputSync to wait until spawning the detached process has succeeded

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  7. put ubuntu runners back in

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  8. Merge branch 'main' into jk/quartonotebookrunner

    @jkrumbiegel
    jkrumbiegel committed Mar 6, 2024
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  9. add markdownForFile method

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    jkrumbiegel committed Mar 6, 2024
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  10. remove unused python script

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    jkrumbiegel committed Mar 6, 2024
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  11. actually make julianative test use julia engine

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Commits on Mar 7, 2024

  1. bump quartonotebookrunner

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  2. startup file no

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  3. use existing project for faster CI

    @jkrumbiegel
    jkrumbiegel committed Mar 7, 2024
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  4. comment out most of CI, reenable windows tmate

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  5. comment out more

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  6. fix bug and actually throw if spawning fails

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    jkrumbiegel committed Mar 7, 2024
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  7. restore CI components

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  8. one more startup file no

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  9. print useful julia internal server errors

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Commits on Mar 8, 2024

  1. move to quartonotebookrunner 0.5

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  2. give visible notice about starting the julia server

    @jkrumbiegel
    jkrumbiegel committed Mar 8, 2024
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  3. fix patch version

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Commits on Mar 14, 2024

  1. implement hmac

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  2. bump to quartonotebookrunner 0.7

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  3. simplify init script, server should already be listening

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  4. improve messages and show server init process output

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  5. time control process out after 5 minutes of inactivity

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    jkrumbiegel committed Mar 14, 2024
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  6. fix error printing

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  7. Merge branch 'main' into jk/quartonotebookrunner

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Commits on Mar 15, 2024

  1. QuartoNotebookRunner 0.7.1

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  2. remove windows special behavior by using spawn and unref

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Commits on Mar 21, 2024

  1. bump QuartoNotebookRunner

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Commits on Mar 25, 2024

  1. Revert "remove windows special behavior by using spawn and unref" 

    This reverts commit 31c8b9e.
    @jkrumbiegel
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  2. Merge branch 'main' into jk/quartonotebookrunner

    @jkrumbiegel
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  3. QuartoNotebookRunner 0.8.1

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Commits on Mar 26, 2024

  1. Merge branch 'main' into jk/quartonotebookrunner

    @jkrumbiegel
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  2. explicitly precompile to surface potential errors in the console

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Commits on Apr 2, 2024

  1. bump to QNR 0.9 for render progress updates

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  2. Merge branch 'main' into jk/quartonotebookrunner

    @jkrumbiegel
    jkrumbiegel committed Apr 2, 2024
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