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primerschemes

Central machine readable repo for newly generated PrimerSchemes and PrimalPanels

For a user navigable version please go here

Quick Start

Each version of a primerscheme has three parts; {schemename}/{ampliconsize}/{version}, which when combined these form the schemes unique identifier.

For a scheme to be added to the repo it requires three essental files.

  • primer.bed: Contains the primer infomation.
  • reference.fasta: Contains the reference genomes.
  • info.json: Contains key metadata for the scheme.

The primal-page create command will generates the info.json and parses a bed file and a fasta file into primer.bed and reference.fasta

Additional files are copied into the schemes work directory.

See primal-page for more details.


This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License

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