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Describe the bug
Bio-Formats can support more ways of handling channels than QuPath can currently read.
Specifically, this includes multiple channels with multiple samples-per-pixel in each channel.
The effective number of channels comes from adding all the samples across all the channels.
To Reproduce
Awkward... Can likely only be reproduced using an image where
metadata.getChannelCount(series) < nChannels
and where the extra channels can be accessed via metadata.getChannelSamplesPerPixel(series, channelInd).
Expected behavior
QuPath properly opens all channel combinations supported by Bio-Formats.
Desktop (please complete the following information):
OS: All
QuPath Version v0.3.2 and all previous
Additional context
When this occurs, we could have mixed modes... like brightfield & something else. So a satisfying fix might require supporting multi-modal images.
The text was updated successfully, but these errors were encountered:
Bug report
Describe the bug
Bio-Formats can support more ways of handling channels than QuPath can currently read.
Specifically, this includes multiple channels with multiple samples-per-pixel in each channel.
The effective number of channels comes from adding all the samples across all the channels.
This problem turned up with a polarised light scan in CZI format: https://forum.image.sc/t/qupath-cant-open-polarized-light-scans/65951
To Reproduce
Awkward... Can likely only be reproduced using an image where
and where the extra channels can be accessed via
metadata.getChannelSamplesPerPixel(series, channelInd)
.Expected behavior
QuPath properly opens all channel combinations supported by Bio-Formats.
Desktop (please complete the following information):
Additional context
When this occurs, we could have mixed modes... like brightfield & something else. So a satisfying fix might require supporting multi-modal images.
The text was updated successfully, but these errors were encountered: