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Solver for sample sequence selection from large DNA datasets for quorum planted motif search

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samselect

Solver for sample sequence selection from large DNA datasets for quorum planted motif search

source code usage

./my_sam [input file] [options]

[input file] the original data file

-l l: motif length

-d d: maximum number of mismatches between a motif and its instance

-q q: proportion of the input sequences containing motif instances

-T T: maximum number of sequences per sample sequence set (default 100)

-h: show this message.

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Solver for sample sequence selection from large DNA datasets for quorum planted motif search

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