Use the current workflows

.Rbuildignore

@@ -31,3 +31,4 @@ _dev\.R$
 ^[.]github$
 ^codecov\.yml$
 ^CODE_OF_CONDUCT\.md$
+^\.github$

.github/workflows/R-CMD-check.yaml

@@ -1,9 +1,17 @@
+# NOTE: This workflow is overkill for most R packages
+# check-standard.yaml is likely a better choice
+# usethis::use_github_action("check-standard") will install it.
+#
+# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
+# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
 on:
   push:
     branches:
+      - main
       - master
   pull_request:
     branches:
+      - main
       - master
 
 name: R-CMD-check
@@ -18,72 +26,82 @@ jobs:
       fail-fast: false
       matrix:
         config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
           - {os: windows-latest, r: '3.6'}
-          - {os: macOS-latest, r: '3.6'}
-          - {os: macOS-latest, r: 'devel'}
-          - {os: ubuntu-16.04, r: '3.2', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
-          - {os: ubuntu-16.04, r: '3.3', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
-          - {os: ubuntu-16.04, r: '3.4', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
-          - {os: ubuntu-16.04, r: '3.5', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
-          - {os: ubuntu-16.04, r: '3.6', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
+          - {os: ubuntu-18.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.0.0 (ubuntu-18.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
+          - {os: ubuntu-18.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
+          - {os: ubuntu-18.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
+          - {os: ubuntu-18.04,   r: '3.5',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
+          - {os: ubuntu-18.04,   r: '3.4',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
+          - {os: ubuntu-18.04,   r: '3.3',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
 
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      CRAN: ${{ matrix.config.cran }}
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
       - uses: actions/checkout@v2
 
-      - uses: r-lib/actions/setup-r@master
+      - uses: r-lib/actions/setup-r@v1
+        id: install-r
         with:
           r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
 
-      - uses: r-lib/actions/setup-pandoc@master
+      - uses: r-lib/actions/setup-pandoc@v1
 
-      - name: Query dependencies
+      - name: Install pak and query dependencies
         run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
+          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
+          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
         shell: Rscript {0}
 
-      - name: Cache R packages
-        if: runner.os != 'Windows'
-        uses: actions/cache@v1
+      - name: Restore R package cache
+        uses: actions/cache@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
-          restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-
+          path: |
+            ${{ env.R_LIBS_USER }}
+            !${{ env.R_LIBS_USER }}/pak
+          key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
+          restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-
 
       - name: Install system dependencies
         if: runner.os == 'Linux'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
         run: |
-          Rscript -e "remotes::install_github('r-hub/sysreqs')"
-          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-          sudo -s eval "$sysreqs"
+          pak::local_system_requirements(execute = TRUE)
+          pak::pkg_system_requirements("rcmdcheck", execute = TRUE)
+        shell: Rscript {0}
 
       - name: Install dependencies
         run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
+          pak::local_install_dev_deps(upgrade = TRUE)
+          pak::pkg_install("rcmdcheck")
+        shell: Rscript {0}
+
+      - name: Session info
+        run: |
+          options(width = 100)
+          pkgs <- installed.packages()[, "Package"]
+          sessioninfo::session_info(pkgs, include_base = TRUE)
         shell: Rscript {0}
 
       - name: Check
-        run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning", check_dir = "check")
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+        run: |
+          options(crayon.enabled = TRUE)
+          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
         shell: Rscript {0}
 
+      - name: Show testthat output
+        if: always()
+        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
       - name: Upload check results
         if: failure()
-        uses: actions/upload-artifact@master
+        uses: actions/upload-artifact@main
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
           path: check
-
-      - name: Test coverage
-        if: matrix.config.os == 'macOS-latest' && matrix.config.r == '3.6'
-        run: |
-          R CMD INSTALL .
-          source shim_package.sh
-          Rscript -e 'covr::codecov()'
-          source unshim_package.sh

.github/workflows/pkgdown.yaml

@@ -8,41 +8,52 @@ name: pkgdown
 
 jobs:
   pkgdown:
-    runs-on: macOS-latest
+    runs-on: ubuntu-18.04
     env:
+      RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
     steps:
       - uses: actions/checkout@v2
 
       - uses: r-lib/actions/setup-r@v1
+        id: install-r
 
       - uses: r-lib/actions/setup-pandoc@v1
 
-      - name: Query dependencies
+      - name: Install pak and query dependencies
         run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
+          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
         shell: Rscript {0}
 
       - name: Restore R package cache
         uses: actions/cache@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+          path: |
+            ${{ env.R_LIBS_USER }}
+            !${{ env.R_LIBS_USER }}/pak
+          key: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
+          restore-keys: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-
+
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        run: |
+          pak::local_system_requirements(execute = TRUE)
+          pak::pkg_system_requirements("pkgdown", execute = TRUE)
+        shell: Rscript {0}
 
       - name: Install dependencies
         run: |
-          remotes::install_deps(dependencies = TRUE)
-          install.packages("pkgdown", type = "binary")
+          pak::local_install_dev_deps(upgrade = TRUE)
+          pak::pkg_install("pkgdown")
         shell: Rscript {0}
 
       - name: Install package
         run: R CMD INSTALL .
 
-      - name: Deploy package
+      - name: Build and deploy pkgdown site
         run: |
-          git config --local user.email "actions@github.com"
-          git config --local user.name "GitHub Actions"
+          git config --local user.name "$GITHUB_ACTOR"
+          git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
           Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'

.github/workflows/pr-commands.yaml

@@ -7,46 +7,49 @@ jobs:
     if: startsWith(github.event.comment.body, '/document')
     name: document
     runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - uses: actions/checkout@v2
-      - uses: r-lib/actions/pr-fetch@master
+      - uses: r-lib/actions/pr-fetch@v1
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-      - uses: r-lib/actions/setup-r@master
+      - uses: r-lib/actions/setup-r@v1
       - name: Install dependencies
         run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)'
       - name: Document
         run: Rscript -e 'roxygen2::roxygenise()'
       - name: commit
         run: |
+          git config --local user.email "actions@github.com"
+          git config --local user.name "GitHub Actions"
           git add man/\* NAMESPACE
           git commit -m 'Document'
-      - uses: r-lib/actions/pr-push@master
+      - uses: r-lib/actions/pr-push@v1
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
   style:
     if: startsWith(github.event.comment.body, '/style')
     name: style
     runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - uses: actions/checkout@v2
-      - uses: r-lib/actions/pr-fetch@master
+      - uses: r-lib/actions/pr-fetch@v1
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-      - uses: r-lib/actions/setup-r@master
+      - uses: r-lib/actions/setup-r@v1
       - name: Install dependencies
         run: Rscript -e 'install.packages("styler")'
       - name: Style
         run: Rscript -e 'styler::style_pkg()'
       - name: commit
         run: |
+          git config --local user.email "actions@github.com"
+          git config --local user.name "GitHub Actions"
           git add \*.R
           git commit -m 'Style'
-      - uses: r-lib/actions/pr-push@master
+      - uses: r-lib/actions/pr-push@v1
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-  # A mock job just to ensure we have a successful build status
-  finish:
-    runs-on: ubuntu-latest
-    steps:
-      - run: true

DESCRIPTION

@@ -66,7 +66,8 @@ Suggests:
     xml2 (>= 1.0.0),
     parallel,
     memoise,
-    mockery
+    mockery,
+    covr
 License: GPL-3
 LazyData: true
 VignetteBuilder: knitr

README.md

@@ -4,6 +4,7 @@
 [![R build status](https://github.com/r-lib/covr/workflows/R-CMD-check/badge.svg)](https://github.com/r-lib/covr/actions)
 [![Codecov test coverage](https://codecov.io/gh/r-lib/covr/branch/master/graph/badge.svg)](https://codecov.io/gh/r-lib/covr?branch=master)
 [![CRAN version](http://www.r-pkg.org/badges/version/covr)](https://cran.r-project.org/package=covr)
+[![R-CMD-check](https://github.com/r-lib/covr/workflows/R-CMD-check/badge.svg)](https://github.com/r-lib/covr/actions)
 <!-- badges: end -->
 
 Track test coverage for your R package and view reports locally or (optionally)

codecov.yml

@@ -6,7 +6,9 @@ coverage:
       default:
         target: auto
         threshold: 1%
+        informational: true
     patch:
       default:
         target: auto
         threshold: 1%
+        informational: true