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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,24 +1,13 @@ | ||
| language: r | ||
| sudo: required | ||
| language: R | ||
| cache: packages | ||
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| bioc_required: true | ||
| warnings_are_errors: true | ||
| bioc_packages: | ||
| - BiocInstaller | ||
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| before_script: | ||
| - git config --global user.name "travis" | ||
| - git config --global user.email "travis@example.org" | ||
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| r_binary_packages: | ||
| - XML | ||
| - Rcpp | ||
| - knitr | ||
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| r_github_packages: | ||
| - rstudio/rmarkdown | ||
| - hadley/testthat | ||
| - jimhester/covr | ||
| - jimhester/lintr | ||
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| bioc_packages: | ||
| - BiocInstaller | ||
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| after_success: | ||
| - Rscript -e 'covr::codecov()' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,85 @@ | ||
| parse_check_results <- function(path) { | ||
| lines <- paste(readLines(path), collapse = "\n") | ||
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| # Strip off trailing NOTE and WARNING messages | ||
| lines <- gsub("^NOTE: There was .*\n$", "", lines) | ||
| lines <- gsub("^WARNING: There was .*\n$", "", lines) | ||
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| pieces <- strsplit(lines, "\n\\* ")[[1]] | ||
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| structure( | ||
| list( | ||
| errors = pieces[grepl("... ERROR", pieces, fixed = TRUE)], | ||
| warnings = pieces[grepl("... WARN", pieces, fixed = TRUE)], | ||
| notes = pieces[grepl("... NOTE", pieces, fixed = TRUE)] | ||
| ), | ||
| path = path, | ||
| class = "check_results" | ||
| ) | ||
| } | ||
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| signal_check_results <- function(x, on = c("none", "error", "warning", "note")) { | ||
| has <- lapply(x, function(x) length(x) > 0) | ||
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| on <- match.arg(on) | ||
| has_problem <- switch(on, | ||
| none = FALSE, | ||
| error = has$errors, | ||
| warning = has$errors | has$warnings, | ||
| note = has$errors | has$warnings | has$notes | ||
| ) | ||
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| if (has_problem) { | ||
| stop(summarise_check_results(x), call. = FALSE) | ||
| } | ||
| invisible(TRUE) | ||
| } | ||
|
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| #' @export | ||
| print.check_results <- function(x, ...) { | ||
| message("R CMD check results") | ||
| message(summarise_check_results(x)) | ||
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| cat(format(x), "\n", sep = "") | ||
| invisible(x) | ||
| } | ||
|
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| #' @export | ||
| format.check_results <- function(x, ...) { | ||
| paste0(unlist(x), collapse = "\n\n") | ||
| } | ||
|
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| summarise_check_results <- function(x) { | ||
| n <- lapply(x, length) | ||
| paste0( | ||
| n$errors, " ", ngettext(n$errors, "error", "errors"), " | ", | ||
| n$warnings, " ", ngettext(n$warnings, "warning", "warnings"), " | ", | ||
| n$notes, " ", ngettext(n$notes, "note", "notes") | ||
| ) | ||
| } | ||
|
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| #' Parses R CMD check log file for ERRORs, WARNINGs and NOTEs | ||
| #' | ||
| #' Extracts check messages from the \code{00check.log} file generated by | ||
| #' \code{R CMD check}. | ||
| #' | ||
| #' @param path check path, e.g., value of the \code{check_dir} argument in a | ||
| #' call to \code{\link{check}} | ||
| #' @param error,warning,note logical, indicates if errors, warnings and/or | ||
| #' notes should be returned | ||
| #' @return a character vector with the relevant messages, can have length zero | ||
| #' if no messages are found | ||
| #' | ||
| #' @seealso \code{\link{check}}, \code{\link{revdep_check}} | ||
| #' @export | ||
| check_failures <- function(path, error = TRUE, warning = TRUE, note = TRUE) { | ||
| check_dir <- file.path(path, "00check.log") | ||
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| results <- parse_check_results(check_dir) | ||
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| c( | ||
| if (error) results$errors, | ||
| if (warning) results$warnings, | ||
| if (note) results$notes | ||
| ) | ||
| } |
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