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Fixed NAMESPACE #3
The issue #2 is fixed in this version as shown below:
> library(gmailr) > gmail_auth("new-installed-applications.json") > x <- messages("test", 5) > x message_id thread_id ## Truncated output
> sessionInfo() R version 3.1.1 (2014-07-10) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale:  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  gmailr_0.0.2 colorout_1.0-2 loaded via a namespace (and not attached):  base64enc_0.1-2 digest_0.6.4 httr_0.4 jsonlite_0.9.10  RCurl_1.95-4.3 stringr_0.6.2
I see that you already merged/re-did some of the things I suggested.
I was learning a bit more about git (see http://stackoverflow.com/questions/12660839/pull-request-for-only-certain-files-commits) on how to separate the commits into different branches. Got 2 of them, but couldn't get the 3rd (most recent) one. But well, it seems that you got everything already except for this small change.
Anyhow, I'll keep in mind next time that you want separate pull requests for each commit.