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Broken: arcasHLA reference --version 3.24.0 #23

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jwhite007 opened this issue Apr 9, 2020 · 2 comments
Closed

Broken: arcasHLA reference --version 3.24.0 #23

jwhite007 opened this issue Apr 9, 2020 · 2 comments

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@jwhite007
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jwhite007 commented Apr 9, 2020

$ ./arcasHLA reference --version 3.24.0
[reference] Error: dat/IMGTHLA/hla.dat empty or corrupted.

It appears that the hash for version 3.24.0 in parameters.p is incorrect. Searching the IMGTHLA repo, I cannot find a commit with hash of c5acf7a4342869351b2382b1cc1d1b5763e7e04e: https://github.com/ANHIG/IMGTHLA/search?q=hash%3Ahash%3Ac5acf7a4342869351b2382b1cc1d1b5763e7e04e&type=Commits.

I did find what appears to be a valid commit for 3.24.0 and attempted to use the hash for it, 4a0401af6be02ca688adeef3f63f5e55288d14fe; however, that fails with the same error message.

@IoanFilip2
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Thank you for using our tool. We have not been able to replicate this error. Are you able to successfully fetch any other IMGT/HLA database version? Did you properly install arcasHLA?

@jwhite007
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@IoanFilip2

Thank you for your response.

This is not an issue, purely my fault. I had neglected to initialize git-lfs for the user which I was running arcasHLA under.

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