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  1. scatterpie scatterpie Public

    Scatter plot with pie chart markers using matplotlib in Python.

    Python 2 1

  2. single-cell-cellphonedb single-cell-cellphonedb Public template

    Snakemake workflow for running cellphonedb.

    Python 1

  3. snakemake-merge-wgs snakemake-merge-wgs Public

    Snakemake pipeline for filtering, lifting over to hg38, and merging WGS gvcf files.

    Python

  4. vdjonsson/rna-seq-pizzly vdjonsson/rna-seq-pizzly Public

    Python

  5. vdjonsson/scimmunity vdjonsson/scimmunity Public

    scimmunity is a python tool for analyzing single-cell RNAseq data specifically for immune and cancer cells. It includes preprocessing, dimension reduction, clustering, annotation, visualization, di…

    Python 2

  6. sbvar sbvar Public

    Varying Parameter Analysis for Systems Biology

    Jupyter Notebook