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cell2sentence

cell2sentence workflow image

Under construction, additional documentation is forthcoming.

Development Setup

Create a conda environment using python3 using anaconda with:

conda create -n cell2sentence python=3.8

and activate the environment with

conda activate cell2sentence

finally, you can install the latest development version of cell2sentence by running

make install

which simply uses pip -e.

You will also need to install several utilities separately for running tests and other various utilities scaffolded in the Makefile.

pip install pytest
pip install pylint
pip install autopep8

These utilities are useful for development purposes but will not be packaged as part of distributions.

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Create cell sentences from sequencing data

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