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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns="http://maven.apache.org/POM/4.0.0"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>PDB-Finder</groupId>
<artifactId>PDB-Finder-Java</artifactId>
<version>1.0-SNAPSHOT</version>
<dependencies>
<!--Stanford Parser Libraries-->
<dependency>
<groupId>edu.stanford.nlp</groupId>
<artifactId>stanford-corenlp</artifactId>
<version>3.4</version>
</dependency>
<dependency>
<groupId>edu.stanford.nlp</groupId>
<artifactId>stanford-parser</artifactId>
<version>3.4</version>
</dependency>
<!--XML Parsing Utility-->
<dependency>
<groupId>com.jcabi</groupId>
<artifactId>jcabi-xml</artifactId>
<version>0.16</version>
</dependency>
<!--The scala language, Only 2.10.4 is able to run locally-->
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
<version>2.10.4</version>
</dependency>
<!--Java helper file io library-->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>18.0</version>
</dependency>
<!--Apache Spark Libraries-->
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-core_2.10</artifactId>
<version>1.1.0</version>
</dependency>
<!--Apache Spark Machine Learning Library-->
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-mllib_2.10</artifactId>
<version>1.1.0</version>
</dependency>
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-sql_2.10</artifactId>
<version>1.1.0</version>
</dependency>
<!--Date Parser-->
<dependency>
<groupId>com.joestelmach</groupId>
<artifactId>natty</artifactId>
<version>0.10.1</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<!--Maven compiler for java version-->
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.0</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
</configuration>
</plugin>
<!--Include lambda expressions for 1.7-->
<plugin>
<groupId>net.orfjackal.retrolambda</groupId>
<artifactId>retrolambda-maven-plugin</artifactId>
<version>2.0.2</version>
<executions>
<execution>
<goals>
<goal>process-main</goal>
<goal>process-test</goal>
</goals>
</execution>
</executions>
<!--Which Java Version to RetroCompile Lambda Expressions To-->
<configuration>
<target>1.7</target>
</configuration>
</plugin>
<!--The shade plugin used to make a super jar of all other jars-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<!--<version>2.3</version>-->
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
</execution>
</executions>
<configuration>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<mainClass>PDB-Finder.Main</mainClass>
</transformer>
</transformers>
<artifactSet>
<includes>
<include>com.jcabi:*</include>
<include>PDB-Finder:*</include>
<include>org.aspectj:*</include>
<!--joestelmach is the date parser and ical4j is a dependency it uses-->
<include>com.joestelmach:*</include>
<include>org.mnode.ical4j:*</include>
<include>backport-util-concurrent:*</include>
<include>javax.validation:*</include>
<include>edu.stanford.nlp:*</include>
<include>net.orfjackal.retrolambda:*</include>
<include>org.apache.spark:*</include>
</includes>
<!-- <excludes> -->
<!-- <exclude>*</exclude> -->
<!-- </excludes> -->
</artifactSet>
<filters>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>META-INF/*.SF</exclude>
<exclude>META-INF/*.DSA</exclude>
<exclude>META-INF/*.RSA</exclude>
<exclude>META_INF/*</exclude>
<exclude>scala/*</exclude>
</excludes>
</filter>
</filters>
<!-- <minimizeJar>true</minimizeJar> -->
</configuration>
</plugin>
</plugins>
</build>
</project>