caMicroscope

A Web Based Annotation and Visualization Platform for Digitized Whole Slide Images

Develop branch build status:

About

caMicroscope is a HTML5 image viewer optimized for large bio-medical image data viewing, with a strong emphasis on cancer pathology.

The Image Viewer server is based on IIPImage server which is a Fast CGI module and OpenSeaDragon which is a deep zoom image viewer.

Usage

caMicroscope should be deployed as part of a stack; for further information see the caMicroscope distribution repository.

Core Features

• Variable resolution browser rendering of slide images of multiple formats

• Segmentation analysis on user-selected regions

• Annotation drawing and sharing

Contributors

Ameen Kazerouni ameen.kazerouni@emory.edu

Alina Jasniewski

Ashish Sharma ashish.sharma@emory.edu

Feiqiao "Bridge" Wang

Ganesh Iyer ganesh.iyer@emory.edu

Ryan Birmingham rbirmin@emory.edu

Sanjay Agravat sagrava@emory.edu

Shaohuan Li shaohuan.li@gmail.com

Tammy DiPrima