Skip to content
Digital pathology image viewer with support for human/machine generated annotations and markups.
Branch: master
Clone or download
Latest commit 7baddb5 Apr 1, 2019
Type Name Latest commit message Commit time
Failed to load latest commit information.
apps add `$` that has more slide info. Apr 1, 2019
common modify pathdb_package to reflect pathdb delivered caMic Mar 25, 2019
components 1. hides the opacity control. Mar 21, 2019
css Change the layers control's layout. Mar 19, 2019
demo fix the demo bug then user can use `demo` to learn how to draw an ann… Mar 4, 2019
dist try to fix map locations to supress warns Apr 1, 2019
docs reorganize the file structures of QUIP3.0. There is a `file_structure… Dec 20, 2018
iconfont 1. Host google material icons locally. - QUIP-279 Sep 10, 2018
package remove header auth Mar 28, 2019
test `collapsiblelist-test-cases.js` fixed travis error. Feb 6, 2019
userDoc Update Userdocs for Seg Mar 5, 2019
.travis.yml make mocha exit when done testing Oct 19, 2018
LICENSE Create LICENSE Jan 25, 2019 reference nanoborb Mar 13, 2019
favicon.ico add favicon so less complaints on frontend Oct 3, 2018
jsdoc_conf.json jsdoc output and config Jul 24, 2018
login.html remove and from end of redir url Oct 16, 2018
package.json reintroduce package.json for tests Mar 1, 2019


A Web Based Annotation and Visualization Platform for Digitized Whole Slide Images

Develop branch build status:

Build Status


caMicroscope is a HTML5 image viewer optimized for large bio-medical image data viewing, with a strong emphasis on cancer pathology.

The Image Viewer server is based on IIPImage server which is a Fast CGI module and OpenSeaDragon which is a deep zoom image viewer.


caMicroscope should be deployed as part of a stack; for further information see the caMicroscope distribution repository.

To use caMicroscope as a standalone application, see nanoborb.

Core Features

  • Variable resolution browser rendering of slide images of multiple formats

  • Segmentation analysis on user-selected regions

  • Annotation drawing and sharing

You can’t perform that action at this time.