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@mschilli87 mschilli87 released this Nov 11, 2019

  • added support for large bowtie indices

  • adjusted BED output to include 5p and 3p arms

  • removed cryptic warning regarding precursors with 0 read mappings

  • deprecated -w option

  • added description for extract_miRNAs.pl

  • updated manual installation in README

  • hardcoded perl binary for install.pl to /usr/bin/perl

Assets 2

@mschilli87 mschilli87 released this Feb 27, 2019

  • fixed uninitialized value errors/warnings

  • rephrased available species message

  • fixed Travis CI (still used to use ~/.bash_profile rather than ~/.bashrc)

Assets 2

@mschilli87 mschilli87 released this Jan 23, 2019

  • improved detection of installation directory & Rfam indices

  • instead of fractions, percantages are used in read statistics

  • several minor improvements to the MRD output format

  • negative repeat count warnings have been removed

  • HTML output does not contain (now dead) links to (old) Rajewsky lab webpage
    anymore

  • install.pl now modifies ~/.bashrc rather than ~/.bash_profile

  • miRDeep2.pl now handles changed RNAfold output

Assets 2

@mschilli87 mschilli87 released this Oct 16, 2018

  • fixed bug resulting in negative repeat count due to too small -l value

  • braces in regex were escaped [deprecated by upstream]

  • miRDeep2 was licensed under GPL v3

  • the documentation was improved and converted to Markdown

  • minor improvements and code cleanup

  • the tutorial is now run via Travis CI on Linux & Mac to test the build

  • Sean Eddys squid libray was removed from the repository

Assets 2

@mschilli87 mschilli87 released this Oct 1, 2018

v0.9.2

Fixed curl https bug, fixed wget recognition bug
Assets 2

@mschilli87 mschilli87 released this Oct 1, 2018

v0.0.91

option -c removed, not working
Assets 2

@mschilli87 mschilli87 released this Oct 1, 2018

v0.0.9

version 0.0.9
Assets 2

@mschilli87 mschilli87 released this Oct 1, 2018

v0.0.8

version 0.0.8
Assets 2

@mschilli87 mschilli87 released this Oct 1, 2018

v0.0.7

version 0.0.7
Assets 2

@mschilli87 mschilli87 released this Oct 1, 2018

v0.0.6

version 0.0.6
Assets 2