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Reduce number of threads in fastq -> BAM #40

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nukappa opened this issue Nov 10, 2022 · 1 comment
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Reduce number of threads in fastq -> BAM #40

nukappa opened this issue Nov 10, 2022 · 1 comment

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@nukappa
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nukappa commented Nov 10, 2022

Rule in the drop-dropseq branch gives up to 32 threads, but most are not used because of I/O being the bottleneck.

Benchmark I/O vs # of different samples and select a better value.
@marvin-jens
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reduced to 8 in commit ca7257b on drop-dropseq

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