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cuCIM 23.02.00 (Date TBD)

Please see https://github.com/rapidsai/cucim/releases/tag/v23.02.00a for the latest changes to this development branch.

cuCIM 22.12.00 (8 Dec 2022)

🚨 Breaking Changes

  • Implement additional deprecations carried out for scikit-image 0.20 (#451) @grlee77
  • improved implementation of ridge filters (bug fixes and reduced memory footprint) (#423) @grlee77

🐛 Bug Fixes

  • pin to cmake !3.25.0 on CI to avoid bug with CUDA+conda during build (#444) @grlee77
  • update incorrect argument and deprecated function for tifffile.TiffWriter (#433) @JoohyungLee0106
  • Fix rotate behavior for ndim > 2 (#432) @grlee77

📖 Documentation

  • add whole-slide tiled read/write demos for measuring GPUDirect Storage (GDS) I/O performance (#452) @grlee77
  • Add demo for distance_transform_edt (#394) @grlee77

🚀 New Features

  • Support no-compression method in converter (#443) @gigony
  • add three segmentation metrics (#425) @grlee77
  • add isotropic binary morphology functions (#421) @grlee77
  • Add blob feature detectors (blob_dog, blob_log, blob_doh) (#413) @monzelr

🛠️ Improvements

  • additional minor updates (skimage 0.20) (#455) @grlee77
  • Implement additional deprecations carried out for scikit-image 0.20 (#451) @grlee77
  • Faster hessian_matrix_* and structure_tensor_eigvals via analytical eigenvalues for the 3D case (#434) @grlee77
  • use fused kernels to reduce overhead in corner detector implementations (#426) @grlee77
  • Misc updates for consistency with scikit-image 0.20 (#424) @grlee77
  • improved implementation of ridge filters (bug fixes and reduced memory footprint) (#423) @grlee77
  • analytical moments computations, support pixel spacings in moments and regionprops (#422) @grlee77
  • Forward merge branch-22.10 to branch-22.12 (#420) @grlee77
  • Support sampling kwarg for distance_transform_edt (take pixel/voxel sizes into account) (#407) @grlee77
  • Improve performance of Euclidean distance transform (#406) @grlee77

cuCIM 22.10.00 (12 Oct 2022)

🐛 Bug Fixes

  • Correctly use dtype when computing shared memory requirements of separable convolution (#409) @grlee77
  • Forward-merge branch-22.08 to branch-22.10 (#403) @jakirkham
  • Add missing imports of euler_number and perimeter_crofton (#386) @grlee77

📖 Documentation

🚀 New Features

🛠️ Improvements

cuCIM 22.08.00 (17 Aug 2022)

🚨 Breaking Changes

  • Stain extraction: use a less strict condition across channels when thresholding (#316) @grlee77

🐛 Bug Fixes

  • create SimilarityTransform using CuPy 9.x-compatible indexing (#365) @grlee77
  • Add __init__.py in cucim.core (#359) @jakirkham
  • Stain extraction: use a less strict condition across channels when thresholding (#316) @grlee77
  • Incorporate bug fixes from skimage 0.19.3 (#312) @grlee77
  • fix RawKernel bug for canny filter when quantiles are used (#310) @grlee77

📖 Documentation

🚀 New Features

  • Add segmentation with the Chan-Vese active contours method (#343) @grlee77
  • Add cucim.skimage.morphology.medial_axis (#342) @grlee77
  • Add cucim.skimage.segmentation.expand_labels (#341) @grlee77
  • Add Euclidean distance transform for images/volumes (#318) @grlee77

🛠️ Improvements

cuCIM 22.06.00 (7 Jun 2022)

🚨 Breaking Changes

  • Promote small integer types to single rather than double precision (#278) @grlee77

🐛 Bug Fixes

📖 Documentation

🚀 New Features

  • add missing cucim.skimage.segmentation.clear_border function (#267) @grlee77
  • add cucim.core.operations.color.stain_extraction_pca and cucim.core.operations.color.normalize_colors_pca for digital pathology H&E stain extraction and normalization (#273) @grlee77, @drbeh

🛠️ Improvements

cuCIM 22.04.00 (6 Apr 2022)

🚨 Breaking Changes

  • Apply fixes to skimage.transform scheduled for scikit-image 0.19.2 (#208) @grlee77

🐛 Bug Fixes

📖 Documentation

🛠️ Improvements

cuCIM 22.02.00 (2 Feb 2022)

🚨 Breaking Changes

  • Update cucim.skimage API to match scikit-image 0.19 (#190) @glee77

🐛 Bug Fixes

  • Fix a bug in v21.12.01 (#191) @gigony
    • Fix GPU memory leak when using nvJPEG API (when device='cuda' parameter is used in read_region method).
  • Fix segfault for preferred_memory_capacity in Python 3.9+ (#214) @gigony

📖 Documentation

🚀 New Features

  • Update cucim.skimage API to match scikit-image 0.19 (#190) @glee77
  • Support multi-threads and batch, and support nvJPEG for JPEG-compressed images (#191) @gigony
  • Allow CuPy 10 (#195) @jakikham

🛠️ Improvements

cuCIM 21.12.00 (9 Dec 2021)

🚀 New Features

🐛 Bug Fixes

📖 Documentation

🛠️ Improvements

cuCIM 21.10.00 (7 Oct 2021)

🐛 Bug Fixes

📖 Documentation

  • Forward-merge branch-21.08 to branch-21.10 (#88) @jakirkham
  • Update PyPI cuCIM v21.08.01 README.md and CHANGELOG.md (#87) @gigony

🚀 New Features

  • Support raw RGB tiled TIFF (#108) @gigony
  • Add a mechanism for user to know the availability of cucim.CuImage (#107) @gigony
  • Enable GDS and Support Runtime Context (enter, exit) for CuFileDriver and CuImage (#106) @gigony
  • Add transforms for Digital Pathology (#100) @shekhardw

🛠️ Improvements

cuCIM 21.08.00 (4 Aug 2021)

🐛 Bug Fixes

  • Remove int-type bug on Windows in skimage.measure.label (#72) @grlee77
  • Fix missing array interface for associated_image() (#65) @gigony
  • Handle zero-padding version string (#59) @gigony
  • Remove invalid conda environment activation (#58) @ajschmidt8

📖 Documentation

🚀 New Features

🛠️ Improvements

  • Add SciPy 2021 to README (#79) @jakirkham
  • Use more descriptive ElementwiseKernel names in cucim.skimage (#75) @grlee77
  • Add initial Python unit/performance tests for TIFF loader module (#62) @gigony
  • Fix 21.08 forward-merge conflicts (#57) @ajschmidt8

cuCIM 21.06.00 (9 Jun 2021)

🐛 Bug Fixes

🛠️ Improvements

cuCIM 0.19.0 (15 Apr 2021)

  • Initial release of cuCIM including cuClaraImage and cupyimg.