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Is your feature request related to a problem? Please describe.
Add unit/integration/system/performance testing for TIFF file loader module (under clara).
The main change is for addressing parts of #38 and #61.
- Add initial unit/perf test cases for TIFF loader
- Add license texts for python tests
This also has the following minor changes:
- Fix some typo in the doc.
- Remove cupy_rc channel in README.md
- Update name in Github templates
- Update calculation of patch_down_count
And build/doc related changes
- Update build script and contributing guide
- Fix broken links in docs
- Sort import statements by using isort
```bash
./run test # execute all tests
./run test python # execute all python tests
./run test python unit # execute all python unit tests
./run test python unit skimage # execute all python unit tests in `skimage` module
./run test python unit clara # execute all python unit tests in `clara` module
./run test python performance # execute all python performance tests
```
Current test folder structure looks like below:
```bash
python/cucim/tests/
├── __init__.py
├── conftest.py
├── fixtures
│ └── testimage.py
├── integration
│ ├── __init__.py
│ └── clara
│ └── __init__.py
├── performance
│ ├── __init__.py
│ └── clara
│ ├── __init__.py
│ └── test_read_region_memory_usage.py
├── test_cucim.py
├── unit
│ ├── __init__.py
│ └── clara
│ ├── __init__.py
│ ├── test_image_cache.py
│ ├── test_load_image.py
│ ├── test_load_image_metadata.py
│ └── test_tiff_read_region.py
└── util
├── gen_image.py
└── gen_tiff.py
```
Authors:
- Gigon Bae (https://github.com/gigony)
Approvers:
- AJ Schmidt (https://github.com/ajschmidt8)
- Gregory R. Lee (https://github.com/grlee77)
- https://github.com/jakirkham
URL: #62
Is your feature request related to a problem? Please describe.
Add unit/integration/system/performance testing for TIFF file loader module (under
clara
).See https://github.com/rapidsai/cucim/wiki/002_setup_tests.md for the details.
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