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Add transforms for Digital Pathology #100

Merged
merged 36 commits into from
Sep 29, 2021
Merged

Add transforms for Digital Pathology #100

merged 36 commits into from
Sep 29, 2021

Commits on Sep 29, 2021

  1. Initial Transforms for digital pathology

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  2. comments from code review addressed

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  3. Zoom integrated, kernels updated

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  4. expose transforms in core.operations

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  5. blank line at end of file fix

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  6. image_rotate and scaling function modified

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  7. Random wrappers for transforms, bug fix (jitter)

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  8. Jitter code fixed for batched data

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  9. Jitter code fixed for batched data v2

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  10. bug fixed in rand flip

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  11. Update python/cucim/src/cucim/core/operations/color/jitter.py 

    Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
    2 people authored and gigony committed Sep 29, 2021
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  12. Update python/cucim/src/cucim/core/operations/color/jitter.py 

    Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  13. Update python/cucim/src/cucim/core/operations/color/jitter.py 

    Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  14. Update python/cucim/src/cucim/core/operations/spatial/rotate_and_flip.py 

    Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  15. Update python/cucim/src/cucim/core/operations/spatial/rotate_and_flip.py 

    Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  16. Update python/cucim/src/cucim/core/operations/spatial/rotate_and_flip.py 

    Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  17. test cases update and review comments

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  18. test file cleaned up for rand_rotate90

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  19. isort check

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  20. blank line fix for test cases

    @shekhardw @gigony
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  21. flask8 on color functions

    @shekhardw @gigony
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  22. isort on color jitter post flask

    @shekhardw @gigony
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  23. flake8 check applied to all files in core/operations

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  24. fixing tests in color jitter and expose

    @shekhardw @gigony
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  25. cleaning up color test image

    @shekhardw @gigony
    shekhardw authored and gigony committed Sep 29, 2021
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  26. Update python/cucim/src/cucim/core/operations/intensity/tests/test_sc… 

    …aling.py

Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  27. Update python/cucim/src/cucim/core/operations/spatial/tests/test_flip.py 

    Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  28. Update python/cucim/src/cucim/core/operations/spatial/tests/test_rand… 

    …om_flip.py

Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  29. Update python/cucim/src/cucim/core/operations/intensity/tests/test_zo… 

    …om.py

Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  30. Update python/cucim/src/cucim/core/operations/intensity/tests/test_ra… 

    …nd_zoom.py

Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
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  31. Update python/cucim/src/cucim/core/operations/color/tests/test_color_… 

    …jitter.py

Co-authored-by: Gregory R. Lee <grlee77@gmail.com>
    @shekhardw @grlee77 @gigony
    2 people authored and gigony committed Sep 29, 2021
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  32. update skimage.data import in test cases

    @shekhardw @gigony
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  33. Update python/cucim/src/cucim/core/operations/expose/tests/test_expos… 

    …e.py

Co-authored-by: jakirkham <jakirkham@gmail.com>
    @shekhardw @jakirkham @gigony
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  34. Update python/cucim/src/cucim/core/operations/color/tests/test_color_… 

    …jitter.py

Co-authored-by: jakirkham <jakirkham@gmail.com>
    @shekhardw @jakirkham @gigony
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  35. expose test cases updated per review comments

    @shekhardw @gigony
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  36. Ignore flake8 error for transform.py 

    ./src/cucim/core/operations/expose/transform.py:18:1: F40
'cucim.core.operations.spatial.rand_image_rotate_90' imported but unused
    @gigony
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