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[FEA] approximate_predict function for HDBSCAN #4872

Merged
merged 91 commits into from
Sep 3, 2022
Merged

[FEA] approximate_predict function for HDBSCAN #4872

merged 91 commits into from
Sep 3, 2022

Commits on Jul 5, 2022

  1. Exemplar indices obtained

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  2. Further additions to distance membership

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    tarang-jain committed Jul 5, 2022
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Commits on Jul 6, 2022

  1. Cleanup dist membership vector

    @tarang-jain
    tarang-jain committed Jul 6, 2022
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  2. Include changes

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    tarang-jain committed Jul 6, 2022
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  3. testing

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    tarang-jain committed Jul 6, 2022
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  4. Further changes

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Commits on Jul 7, 2022

  1. Further changes to distance based membership (clean build)

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  2. Reuse label map, replace unique_by_key with sorted_coo_to_csr

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    tarang-jain committed Jul 7, 2022
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Commits on Jul 11, 2022

  1. Outlier based membership initial commit (unclean build)

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Commits on Jul 12, 2022

  1. Restructuring functions (unclean build)

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  2. Intermediate commits

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    tarang-jain committed Jul 12, 2022
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Commits on Jul 15, 2022

  1. Corrections in exemplar computation and outlier membership

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Commits on Jul 19, 2022

  1. All point membership vector all parts working

    @tarang-jain
    tarang-jain committed Jul 19, 2022
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Commits on Jul 20, 2022

  1. Initial commit for Prediction Data class

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    tarang-jain committed Jul 20, 2022
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Commits on Jul 25, 2022

  1. initial commit

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    tarang-jain committed Jul 25, 2022
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  2. Staged changes

    @tarang-jain
    tarang-jain committed Jul 25, 2022
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  3. Circling back to implementation without PredictionData

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    tarang-jain committed Jul 25, 2022
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Commits on Jul 26, 2022

  1. PredictionData finally added (errors in cython)

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  2. Clean build with somee debug statements

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    tarang-jain committed Jul 26, 2022
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  3. Python API created and working

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    tarang-jain committed Jul 26, 2022
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  4. convert output dtype to cupy

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    tarang-jain committed Jul 26, 2022
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Commits on Jul 27, 2022

  1. Debugging exemplar_idx with large number of clusters

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Commits on Jul 28, 2022

  1. correction cache function and moving to .cu file

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  2. Allow size_t as size of dataset (note: beware of limits as laterconve… 

    …rted to int))
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    tarang-jain committed Jul 28, 2022
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Commits on Jul 29, 2022

  1. Save data (self.X_m), resolving compute-sanitizer errors

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  2. Resolving compute-santiizer error

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    tarang-jain committed Jul 29, 2022
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Commits on Aug 1, 2022

  1. Added gtest

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    tarang-jain committed Aug 1, 2022
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  2. Further changes to pytest

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    tarang-jain committed Aug 1, 2022
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Commits on Aug 2, 2022

  1. Add pytest, add support for distance metrics

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    tarang-jain committed Aug 2, 2022
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  2. Styling changes

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    tarang-jain committed Aug 2, 2022
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  3. Resolved build failure

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    tarang-jain committed Aug 2, 2022
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  4. Styling and copyright changes

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    tarang-jain committed Aug 2, 2022
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  5. Added prediction_data to get_param_names

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    tarang-jain committed Aug 2, 2022
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Commits on Aug 9, 2022

  1. Remove debug and sync statements from runner.h

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Commits on Aug 10, 2022

  1. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-all-… 

    …points-membership-vector-hdbscan
    @tarang-jain
    tarang-jain committed Aug 10, 2022
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  2. Updated docs for CI failure

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    tarang-jain committed Aug 10, 2022
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Commits on Aug 11, 2022

  1. Docs changes for failing CI

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    tarang-jain committed Aug 11, 2022
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  2. Rename namespace to Predict

    @tarang-jain
    tarang-jain committed Aug 11, 2022
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  3. some changes after PR review

    @tarang-jain
    tarang-jain committed Aug 11, 2022
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  4. debugging failing gtest

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    tarang-jain committed Aug 11, 2022
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Commits on Aug 12, 2022

  1. Updates after PR changes (failing GTest handled)

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  2. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-all-… 

    …points-membership-vector-hdbscan
    @tarang-jain
    tarang-jain committed Aug 12, 2022
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  3. Merge branch 'rapidsai:branch-22.10' into fea-all-points-membership-v… 

    …ector-hdbscan
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Commits on Aug 15, 2022

  1. Adding new separate hdbscan() function for prediction_data aftter PR … 

    …review
    @tarang-jain
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  2. Merge branch 'fea-all-points-membership-vector-hdbscan' of github.com… 

    …:tarang-jain/cuml into fea-all-points-membership-vector-hdbscan
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Commits on Aug 16, 2022

  1. Updates to docs

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    tarang-jain committed Aug 16, 2022
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  2. Update python docs

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    tarang-jain committed Aug 16, 2022
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  3. include count header for failing CI

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    tarang-jain committed Aug 16, 2022
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Commits on Aug 19, 2022

  1. New branch to account for latest membership vector changes

    @tarang-jain
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  2. Fixing bug related to unconverted labels

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    tarang-jain committed Aug 19, 2022
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  3. Merge branch 'fea-all-points-membership-vector-hdbscan' of github.com… 

    …:tarang-jain/cuml into fea-approximate-predict-hdbscan-new
    @tarang-jain
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  4. Remove debug statements and formatting

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    tarang-jain committed Aug 19, 2022
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Commits on Aug 22, 2022

  1. Debugging, Added google test

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    tarang-jain committed Aug 22, 2022
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  2. Added core_dists arg to build_linkage

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    tarang-jain committed Aug 22, 2022
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Commits on Aug 23, 2022

  1. Added pytest

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    tarang-jain committed Aug 23, 2022
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  2. fixing docs and copyright

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    tarang-jain committed Aug 23, 2022
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Commits on Aug 24, 2022

  1. Update names and docs after PR Review

    @tarang-jain
    tarang-jain committed Aug 24, 2022
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Commits on Aug 25, 2022

  1. Handling edge case when there are no clusters in the cluster tree

    @tarang-jain
    tarang-jain committed Aug 25, 2022
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  2. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-appr… 

    …oximate-predict-hdbscan-new
    @tarang-jain
    tarang-jain committed Aug 25, 2022
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  3. Update pytest

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  4. Update pytest

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  5. Further changes to pytest

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  6. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-appr… 

    …oximate-predict-hdbscan-new
    @tarang-jain
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Commits on Aug 26, 2022

  1. Handled failing gtest

    @tarang-jain
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  2. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-appr… 

    …oximate-predict-hdbscan-new
    @tarang-jain
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  3. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-appr… 

    …oximate-predict-hdbscan-new
    @tarang-jain
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  4. Edge case handling on python side

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  5. Merge with upstream (resolve conflicts)

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  6. Resolving style changes

    @tarang-jain
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  7. Resolving merge conflicts, style issues

    @tarang-jain
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Commits on Aug 29, 2022

  1. Refactoring approximate_predict (simplify)

    @tarang-jain
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  2. Update docs

    @tarang-jain
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  3. Debug gtest after refactoring

    @tarang-jain
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  4. Resolved failing gtest

    @tarang-jain
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  5. Added index_into_children to PredictionData, avoid duplicate computat… 

    …ions
    @tarang-jain
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  6. Update docs

    @tarang-jain
    tarang-jain committed Aug 29, 2022
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  7. Rename prediction_data_ attribute

    @tarang-jain
    tarang-jain committed Aug 29, 2022
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  8. Check for dimensions mismatch

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    tarang-jain committed Aug 29, 2022
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  9. Little doc update from PR review

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  10. Refactoring: added prediction utilities to prediction.pyx

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Commits on Aug 30, 2022

  1. Style fix

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  2. Fix discrepancy in core distance computation

    @tarang-jain
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  3. Final fix for discrepancy in core distance computation

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  4. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-appr… 

    …oximate-predict-hdbscan-new
    @tarang-jain
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  5. Update gtest

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Commits on Sep 1, 2022

  1. Update pytest

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  2. Merge branch 'branch-22.10' of github.com:rapidsai/cuml into fea-appr… 

    …oximate-predict-hdbscan-new
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Commits on Sep 2, 2022

  1. Adding pytests for moons and circles to test hdbscan approximate pred… 

    …iction and membership vectors
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  2. Fixing line width

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  3. Add digits pytest

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  4. Updates after PR reviews

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