Merge pull request #59 from rapidsurveys/dev

update vignette setup

DESCRIPTION

@@ -25,7 +25,7 @@ Imports:
     tibble,
     rmarkdown
 Suggests: 
-    testthat,
+    testthat (>= 3.0.0),
     covr,
     DiagrammeR,
     dplyr,
@@ -41,3 +41,4 @@ RoxygenNote: 7.3.1
 VignetteBuilder: knitr
 URL: https://rapidsurveys.io/oldr/, https://github.com/rapidsurveys/oldr
 BugReports: https://github.com/rapidsurveys/oldr/issues
+Config/testthat/edition: 3

README.Rmd

@@ -17,15 +17,16 @@ knitr::opts_chunk$set(
 
 # oldr: An Implementation of the Rapid Assessment Method for Older People (RAM-OP) <img src="man/figures/logo.png" width="200" align="right" />
 
-<!-- Badges start here-->
+<!-- badges: start -->
 [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 [![R-CMD-check](https://github.com/rapidsurveys/oldr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rapidsurveys/oldr/actions/workflows/R-CMD-check.yaml)
+[![R-hub](https://github.com/rapidsurveys/oldr/actions/workflows/rhub.yaml/badge.svg)](https://github.com/rapidsurveys/oldr/actions/workflows/rhub.yaml)
 [![test-coverage](https://github.com/rapidsurveys/oldr/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/rapidsurveys/oldr/actions/workflows/test-coverage.yaml)
 [![codecov](https://codecov.io/gh/rapidsurveys/oldr/branch/main/graph/badge.svg)](https://codecov.io/gh/rapidsurveys/oldr)
 [![CodeFactor](https://www.codefactor.io/repository/github/rapidsurveys/oldr/badge)](https://www.codefactor.io/repository/github/rapidsurveys/oldr)
 [![DOI](https://zenodo.org/badge/105472081.svg)](https://zenodo.org/badge/latestdoi/105472081)
-<!-- Badges end here-->
+<!-- badges: end -->
 
 [HelpAge International](http://www.helpage.org), [VALID International](http://www.validinternational.org), and [Brixton Health](http://www.brixtonhealth.com), with financial assistance from the [Humanitarian Innovation Fund (HIF)](http://www.elrha.org/hif/home/), have developed a **Rapid Assessment Method for Older People (RAM-OP)** that provides accurate and reliable estimates of the needs of older people. The method uses simple procedures, in a short time frame (i.e. about two weeks including training, data collection, data entry, and data analysis), and at considerably lower cost than other methods. The **RAM-OP** method is based on the following principles:
 

README.md

@@ -3,19 +3,20 @@
 
 # oldr: An Implementation of the Rapid Assessment Method for Older People (RAM-OP) <img src="man/figures/logo.png" width="200" align="right" />
 
-<!-- Badges start here-->
+<!-- badges: start -->
 
 [![Project Status: Active – The project has reached a stable, usable
 state and is being actively
 developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![Lifecycle:
 stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 [![R-CMD-check](https://github.com/rapidsurveys/oldr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rapidsurveys/oldr/actions/workflows/R-CMD-check.yaml)
+[![R-hub](https://github.com/rapidsurveys/oldr/actions/workflows/rhub.yaml/badge.svg)](https://github.com/rapidsurveys/oldr/actions/workflows/rhub.yaml)
 [![test-coverage](https://github.com/rapidsurveys/oldr/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/rapidsurveys/oldr/actions/workflows/test-coverage.yaml)
 [![codecov](https://codecov.io/gh/rapidsurveys/oldr/branch/main/graph/badge.svg)](https://codecov.io/gh/rapidsurveys/oldr)
 [![CodeFactor](https://www.codefactor.io/repository/github/rapidsurveys/oldr/badge)](https://www.codefactor.io/repository/github/rapidsurveys/oldr)
 [![DOI](https://zenodo.org/badge/105472081.svg)](https://zenodo.org/badge/latestdoi/105472081)
-<!-- Badges end here-->
+<!-- badges: end -->
 
 [HelpAge International](http://www.helpage.org), [VALID
 International](http://www.validinternational.org), and [Brixton

tests/testthat.R

@@ -1,3 +1,11 @@
+# This file is part of the standard setup for testthat.
+# It is recommended that you do not modify it.
+#
+# Where should you do additional test configuration?
+# Learn more about the roles of various files in:
+# * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
+# * https://testthat.r-lib.org/articles/special-files.html
+
 library(testthat)
 library(oldr)
 

vignettes/ram_op_workflow.Rmd

@@ -134,7 +134,7 @@ DiagrammeR::grViz("
 ```
 
 ```{r workflow, echo = FALSE, eval = TRUE, out.width = "80%"}
-knitr::include_graphics("../man/figures/ramOPworkflow.png")
+knitr::include_graphics("figures/ramOPworkflow.png")
 ```
 
 The `oldr` package provides functions to use for all steps after data collection. These functions were developed specifically for the data structure created by the [EpiData](https://www.dropbox.com/s/2kudlxjqcqn8wph/RAMOP%20data%20entry%20files%20%28English%29.zip?dl=0) or the [Open Data Kit](https://ona.io/helpage/75817/368135/form.xls) collection tools. The data structure produced by these collection tools is shown by the dataset `testSVY` included in the `oldr` package.
@@ -402,5 +402,5 @@ testSVY %>%
 which results in an HTML file saved in the specified output directory that looks something like this:
 
 ```{r estimateReport2, echo = FALSE, eval = TRUE}
-knitr::include_graphics("../man/figures/htmlReport.png")
+knitr::include_graphics("figures/htmlReport.png")
 ```