Skip to content

Single Cell RNA-seq normalization using regularized negative binomial regression

License

Notifications You must be signed in to change notification settings

rasmushenningsson/SCTransform.jl

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

24 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

SCTransform.jl

Build Status Coverage

This is a Julia implementation of sctransform, based on the paper Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression by Hafemaister and Satija.

This is an independent implementation, the original authors were not involved. Here is the original R implementation of sctransform.

Usage

The doc strings for scparams and sctransform describe the usage. Also see the SingleCellProjections.jl package which provides a framework for working with Single Cell expression data and supports SCTransform.jl.

Note that threading should be enabled in Julia for SCTransform.jl to work optimally.

About

Single Cell RNA-seq normalization using regularized negative binomial regression

Resources

License

Stars

Watchers

Forks

Packages

No packages published