Mark tests that call GDAL binaries (#1555)

ISSUE_TEMPLATE.md

@@ -11,10 +11,14 @@ often omit.
 The primary forum for questions about installation and usage of Rasterio is 
 https://rasterio.groups.io/g/main. The authors and other users will answer 
 questions when they have expertise to share and time to explain. Please take the
-time to craft a clear question and be patient about responses.
-
-Please do not bring these questions to Rasterio's issue tracker, which we want
-to reserve for bug reports and other actionable issues.
+time to craft a clear question and be patient about responses. Please do not
+bring these questions to Rasterio's issue tracker, which we want to reserve for
+bug reports and other actionable issues.
+
+Questions about development of Rasterio, brainstorming, requests for comment,
+and not-yet-actionable proposals are welcome in the project's developers 
+discussion group https://rasterio.groups.io/g/dev. Issues opened in Rasterio's
+GitHub repo which haven't been socialized there may be perfunctorily closed.
 
 Please note: Rasterio contains extension modules and is thus susceptible to
 C library compatibility issues. If you are reporting an installation or module

README.rst

@@ -195,8 +195,7 @@ Linux
 Rasterio distributions are available from UbuntuGIS and Anaconda's conda-forge
 channel.
 
-`Manylinux1 <https://github.com/pypa/manylinux>`__ distributions may be
-available in the future.
+`Manylinux1 <https://github.com/pypa/manylinux>`__ wheels are available on PyPI.```
 
 OS X
 ++++

rasterio/plot.py

@@ -155,7 +155,8 @@ def plotting_extent(source, transform=None):
     Parameters
     ----------
     source : array or dataset object opened in 'r' mode
-        input data
+        If array, data in the order rows, columns and optionally bands. If array
+        is band order (bands in the first dimension), use arr[0]
     transform: Affine, required if source is array
         Defines the affine transform if source is an array
 

tests/test_blocks.py

@@ -112,6 +112,7 @@ def setUp(self):
     def tearDown(self):
         shutil.rmtree(self.tempdir)
 
+    @pytest.mark.gdalbin
     def test_write_window(self):
         name = os.path.join(self.tempdir, "test_write_window.tif")
         a = np.ones((50, 50), dtype=rasterio.ubyte) * 127

tests/test_crs.py

@@ -50,6 +50,7 @@ def test_read_epsg3857(tmpdir):
 
 
 # Ensure that CRS sticks when we write a file.
+@pytest.mark.gdalbin
 def test_write_3857(tmpdir):
     src_path = str(tmpdir.join('lol.tif'))
     subprocess.call([

tests/test_nodata.py

@@ -8,6 +8,7 @@
 
 logging.basicConfig(stream=sys.stderr, level=logging.DEBUG)
 
+@pytest.mark.gdalbin
 def test_nodata(tmpdir):
     dst_path = str(tmpdir.join('lol.tif'))
     with rasterio.open('tests/data/RGB.byte.tif') as src:
@@ -24,6 +25,7 @@ def test_nodata(tmpdir):
     pattern = b'Band 2.*?NoData Value=0'
     assert re.search(pattern, info, re.DOTALL) is not None
 
+@pytest.mark.gdalbin
 def test_set_nodata(tmpdir):
     dst_path = str(tmpdir.join('lol.tif'))
     with rasterio.open('tests/data/RGB.byte.tif') as src:

tests/test_png.py

@@ -1,4 +1,5 @@
 import logging
+import pytest
 import subprocess
 import sys
 import numpy as np
@@ -7,6 +8,7 @@
 logging.basicConfig(stream=sys.stderr, level=logging.DEBUG)
 
 
+@pytest.mark.gdalbin
 def test_write_ubyte(tmpdir):
     name = str(tmpdir.mkdir("sub").join("test_write_ubyte.png"))
     a = np.ones((100, 100), dtype=rasterio.ubyte) * 127

tests/test_update.py

@@ -11,6 +11,7 @@
 from .conftest import requires_gdal21
 
 
+@pytest.mark.gdalbin
 def test_update_tags(data):
     tiffname = str(data.join('RGB.byte.tif'))
     with rasterio.open(tiffname, 'r+') as f:

tests/test_write.py

@@ -60,6 +60,7 @@ def test_no_crs(tmpdir):
         dst.write(np.ones((100, 100), dtype=rasterio.uint8), indexes=1)
 
 
+@pytest.mark.gdalbin
 def test_context(tmpdir):
     name = str(tmpdir.join("test_context.tif"))
     with rasterio.open(
@@ -87,6 +88,7 @@ def test_context(tmpdir):
     assert "Band 1 Block=100x81 Type=Byte, ColorInterp=Gray" in info
 
 
+@pytest.mark.gdalbin
 def test_write_ubyte(tmpdir):
     name = str(tmpdir.mkdir("sub").join("test_write_ubyte.tif"))
     a = np.ones((100, 100), dtype=rasterio.ubyte) * 127
@@ -99,6 +101,7 @@ def test_write_ubyte(tmpdir):
     assert "Minimum=127.000, Maximum=127.000, Mean=127.000, StdDev=0.000" in info
 
 
+@pytest.mark.gdalbin
 def test_write_ubyte_multi(tmpdir):
     name = str(tmpdir.mkdir("sub").join("test_write_ubyte_multi.tif"))
     a = np.ones((100, 100), dtype=rasterio.ubyte) * 127
@@ -111,6 +114,7 @@ def test_write_ubyte_multi(tmpdir):
     assert "Minimum=127.000, Maximum=127.000, Mean=127.000, StdDev=0.000" in info
 
 
+@pytest.mark.gdalbin
 def test_write_ubyte_multi_list(tmpdir):
     name = str(tmpdir.mkdir("sub").join("test_write_ubyte_multi_list.tif"))
     a = np.array([np.ones((100, 100), dtype=rasterio.ubyte) * 127])
@@ -123,6 +127,7 @@ def test_write_ubyte_multi_list(tmpdir):
     assert "Minimum=127.000, Maximum=127.000, Mean=127.000, StdDev=0.000" in info
 
 
+@pytest.mark.gdalbin
 def test_write_ubyte_multi_3(tmpdir):
     name = str(tmpdir.mkdir("sub").join("test_write_ubyte_multi_list.tif"))
     arr = np.array(3 * [np.ones((100, 100), dtype=rasterio.ubyte) * 127])
@@ -135,6 +140,7 @@ def test_write_ubyte_multi_3(tmpdir):
     assert "Minimum=127.000, Maximum=127.000, Mean=127.000, StdDev=0.000" in info
 
 
+@pytest.mark.gdalbin
 def test_write_float(tmpdir):
     name = str(tmpdir.join("test_write_float.tif"))
     a = np.ones((100, 100), dtype=rasterio.float32) * 42.0
@@ -149,6 +155,7 @@ def test_write_float(tmpdir):
     assert "Minimum=42.000, Maximum=42.000, Mean=42.000, StdDev=0.000" in info
 
 
+@pytest.mark.gdalbin
 def test_write_crs_transform(tmpdir):
     name = str(tmpdir.join("test_write_crs_transform.tif"))
     a = np.ones((100, 100), dtype=rasterio.ubyte) * 127
@@ -170,7 +177,7 @@ def test_write_crs_transform(tmpdir):
     # (precision varies slightly by platform)
     assert re.search(r'Pixel Size = \(300.03792\d+,-300.04178\d+\)', info)
 
-
+@pytest.mark.gdalbin
 def test_write_crs_transform_affine(tmpdir):
     name = str(tmpdir.join("test_write_crs_transform.tif"))
     a = np.ones((100, 100), dtype=rasterio.ubyte) * 127
@@ -192,6 +199,7 @@ def test_write_crs_transform_affine(tmpdir):
     assert re.search(r'Pixel Size = \(300.03792\d+,-300.04178\d+\)', info)
 
 
+@pytest.mark.gdalbin
 def test_write_crs_transform_2(tmpdir):
     """Using 'EPSG:32618' as CRS."""
     name = str(tmpdir.join("test_write_crs_transform.tif"))
@@ -213,6 +221,7 @@ def test_write_crs_transform_2(tmpdir):
     assert re.search(r'Pixel Size = \(300.03792\d+,-300.04178\d+\)', info)
 
 
+@pytest.mark.gdalbin
 def test_write_crs_transform_3(tmpdir):
     """Using WKT as CRS."""
     name = str(tmpdir.join("test_write_crs_transform.tif"))
@@ -235,6 +244,7 @@ def test_write_crs_transform_3(tmpdir):
     assert re.search(r'Pixel Size = \(300.03792\d+,-300.04178\d+\)', info)
 
 
+@pytest.mark.gdalbin
 def test_write_meta(tmpdir):
     name = str(tmpdir.join("test_write_meta.tif"))
     a = np.ones((100, 100), dtype=rasterio.ubyte) * 127
@@ -245,6 +255,7 @@ def test_write_meta(tmpdir):
     assert "Minimum=127.000, Maximum=127.000, Mean=127.000, StdDev=0.000" in info
 
 
+@pytest.mark.gdalbin
 def test_write_nodata(tmpdir):
     name = str(tmpdir.join("test_write_nodata.tif"))
     a = np.ones((100, 100), dtype=rasterio.ubyte) * 127