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Imports PharmGKB external ids from files downloaded from PharmGKB website.

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rat-genome-database/pharmgkb-pipeline

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pharmgkb-pipeline

Imports external ids for human genes from PharmGKB (https://api.pharmgkb.org/v1/download/file/data/genes.zip).

After downloading the file, every data line is compared against RGD genes. To find the matching gene in RGD, a lookup is performed by:

  1. HGNC id

  2. If a single match, the gene is found. If not a single match, or multiple matches, match by NCBI Gene Id is performed

  3. If a single match, the gene is found. If not a single match, or multiple matches, match by Ensembl Gene Id is performed

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Imports PharmGKB external ids from files downloaded from PharmGKB website.

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