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Python 15 11

spladder

Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

Updated May 6, 2016

MiTie

The RNA-seq transcript predictor for multiple samples

Updated Mar 18, 2016

mmr

A tool for Read Multi-Mapper Resolution

Updated Feb 1, 2016

PBWT-sec

C++ implementation of PBWT-seq

Updated Nov 24, 2015

Python 3 2

RiboDiff

RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data

Updated Nov 3, 2015

Shell 2 0

oqtans

The master Oqtans repository with submodules

Updated Sep 30, 2015

oqtans_tools

Oqtans repository

Updated Sep 30, 2015

Shell 0 0

oqtans_src

Source code to compile dependencies for Oqtans

Updated Sep 30, 2015

oqtans_doc

Documentations of Oqtans

Updated Sep 30, 2015

oqtans_dep

Binary files of dependencies for Oqtans

Updated Sep 30, 2015

Python 0 0

RNA-geeq

Updated Sep 24, 2015

rDiff

Tests for Differential RNA Isoform Expression

Updated Apr 17, 2015

Matlab 1 0

rQuant

The RNA-seq transcript quantifier with Bias Correction

Updated Feb 14, 2015

palmapper

The accurate RNA-seq mapper

Updated Mar 1, 2014

dss

The Dyadic Snapshot Scheduler written by Andre Noll and Daniel Richard G. Details can be found here: http://git.tuebingen.mpg.de/cgi-bin/gitweb.cgi?p=dss.git

Updated Apr 18, 2013

Matlab 2 0

HMSVMToolbox

The Hidden Markov SVM Toolbox

Updated Apr 9, 2013

AdaBoost

Adaboost-Reg and RBF-Network code

Updated Apr 8, 2013

ASP

Accurate Splice Site Predictions

Updated Feb 5, 2013

shogun

forked from shogun-toolbox/shogun

The Shogun Machine Learning Toolbox (Source Code)

Updated Oct 14, 2012

TranscriptSkimmer

Detection of high confidence transcript annotations from RNA-seq

Updated Oct 11, 2012

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