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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required (VERSION 3.6.1)
project(AnnoGraph)
enable_testing()
if(NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE "DEBUG")
endif()
string(APPEND CMAKE_CXX_FLAGS " \
-std=c++14 -Wall -Wextra -Werror -Wno-ignored-qualifiers \
-msse4.2 -mavx -mavx2 -mbmi -mbmi2 -g \
-fopenmp -D_THREAD_SAFE -pthread") # -DDBGDEBUG
# Profile build type
set(CMAKE_CXX_FLAGS_PROFILE "-pg -DNDEBUG -O2 -g")
set(CMAKE_EXE_LINKER_FLAGS_PROFILE "-pg -g")
set(CMAKE_SHARED_LINKER_FLAGS_PROFILE "-pg -g")
# Debug build type
set(CMAKE_CXX_FLAGS_DEBUG "-O2 -g")
set(CMAKE_VERBOSE_MAKEFILE 1)
cmake_policy(SET CMP0015 NEW)
link_directories(
external-libraries/sdsl-lite/lib
)
include_directories(
bloom_annotator
wavelet_trie
)
add_subdirectory(
bloom_annotator
)
add_subdirectory(
wavelet_trie
)
file(GLOB src_files "*.cpp")
list(FILTER src_files EXCLUDE REGEX ".*\\._.*")
list(FILTER src_files EXCLUDE REGEX ".*main.cpp")
add_library(annographlibs STATIC ${src_files})
add_executable(annograph "main.cpp")
set(METALIBS
-lhts -lz -lbz2
-lssl -lcrypto -llzma
-lsdsl -lgmp
)
if(BUILD_STATIC)
set(CMAKE_EXE_LINKER_FLAGS ${CMAKE_EXE_LINKER_FLAGS} -static)
set(METALIBS ${METALIBS} -lcurl)
endif()
#target_include_directories(
# annographlibs PUBLIC
#)
target_link_libraries(
annographlibs bloom_annotator wtr_libs ${METALIBS}
)
target_link_libraries(
annograph annographlibs ${METALIBS}
)
#-------------------
# Unit Tests
#-------------------
# Download and unpack googletest at configure time
if(NOT EXISTS ${CMAKE_BINARY_DIR}/googletest-download)
configure_file(CMakeLists.txt.in googletest-download/CMakeLists.txt)
execute_process(COMMAND ${CMAKE_COMMAND} -G "${CMAKE_GENERATOR}" .
RESULT_VARIABLE result
WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/googletest-download )
if(result)
message(FATAL_ERROR "CMake step for googletest failed: ${result}")
endif()
execute_process(COMMAND ${CMAKE_COMMAND} --build .
RESULT_VARIABLE result
WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/googletest-download )
if(result)
message(FATAL_ERROR "Build step for googletest failed: ${result}")
endif()
endif()
# Prevent overriding the parent project's compiler/linker settings on Windows
set(gtest_force_shared_crt ON CACHE BOOL "" FORCE)
add_subdirectory(
${CMAKE_BINARY_DIR}/googletest-src
${CMAKE_BINARY_DIR}/googletest-build
EXCLUDE_FROM_ALL
)
file(GLOB unit_tests_files "tests/*.cpp")
list(FILTER unit_tests_files EXCLUDE REGEX ".*\\._.*")
if (CMAKE_VERSION VERSION_LESS 2.8.11)
include_directories("${gtest_SOURCE_DIR}/include")
endif()
include_directories(
.
)
link_directories(
${CMAKE_BINARY_DIR}
)
add_executable(unit_tests ${unit_tests_files})
target_link_libraries(unit_tests gtest_main gtest annographlibs ${METALIBS})
add_test(NAME unit_tests COMMAND unit_tests)