Detect auto-correlations via np.allclose, rather than equality #1014
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| name: Ubuntu CI | |
| on: [push, pull_request] | |
| jobs: | |
| check_skip: | |
| runs-on: ubuntu-latest | |
| if: | | |
| !contains(format('{0} {1} {2}', github.event.head_commit.message, github.event.pull_request.title, github.event.pull_request.body), '[skip ci]') | |
| steps: | |
| - run: | | |
| cat <<'MESSAGE' | |
| github.event_name: ${{ toJson(github.event_name) }} | |
| github.event: | |
| ${{ toJson(github.event) }} | |
| MESSAGE | |
| test: | |
| needs: check_skip | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| env: | |
| NUMBA_CACHE_DIR: /tmp/numba-cache | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5.1.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip and setuptools | |
| run: > | |
| python -m pip install -U | |
| pip | |
| setuptools | |
| pipenv | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Restore repo times | |
| uses: chetan/git-restore-mtime-action@v2 | |
| - name: Create Key and Numba Cache Directory | |
| id: numba-key | |
| run: | | |
| mkdir -p ${{ env.NUMBA_CACHE_DIR }} | |
| echo "timestamp=$(/bin/date -u '+%Y%m%d%H%M%S')" >> $GITHUB_OUTPUT | |
| - name: Cache Numba Kernels | |
| uses: actions/cache@v4 | |
| with: | |
| key: numba-cache-${{ matrix.python-version }}-${{ steps.numba-key.outputs.timestamp }} | |
| restore-keys: numba-cache-${{ matrix.python-version }}- | |
| path: ${{ env.NUMBA_CACHE_DIR }} | |
| - name: Create a .env file | |
| run: | | |
| touch .env | |
| echo "NUMBA_NRT_STATS=1" >> .env | |
| echo "NUMBA_CAPTURED_ERRORS='new_style'" >> .env | |
| - name: Install base codex-africanus | |
| run: pipenv install .[testing] | |
| - name: Run base test suite | |
| run: pipenv run py.test -s -vvv africanus/ | |
| - name: List the measures directory | |
| run: curl ftp://ftp.astron.nl/outgoing/Measures/ > measures_dir.txt | |
| - name: Load cached CASA Measures Data | |
| id: load-cached-casa-measures | |
| uses: actions/cache@v4 | |
| with: | |
| key: casa-measures-${{ hashFiles('measures_dir.txt')}} | |
| path: | | |
| ~/measures | |
| ~/.casarc | |
| - name: Download and install CASA Measures Data | |
| if: steps.load-cached-casa-measures.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir -p ~/measures | |
| curl ftp://ftp.astron.nl/outgoing/Measures/WSRT_Measures.ztar | tar xvzf - -C ~/measures | |
| echo "measures.directory: ~/measures" > ~/.casarc | |
| - name: Install complete codex-africanus | |
| run: > | |
| pipenv install | |
| .[complete] | |
| git+https://gitlab.mpcdf.mpg.de/ift/nifty_gridder.git#egg=nifty-gridder | |
| - name: Log installed package versions | |
| run: pipenv graph | |
| - name: Run complete test suite | |
| run: pipenv run py.test -s -vvv africanus/ | |
| deploy: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| # Run on a push to a tag or master | |
| if: > | |
| github.event_name == 'push' && | |
| (startsWith(github.event.ref, 'refs/tags') || | |
| github.event.ref == 'refs/heads/master') | |
| steps: | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5.1.0 | |
| with: | |
| python-version: '3.10' | |
| - name: Install latest setuptools, wheel, pip | |
| run: python3 -m pip install -U pip setuptools wheel | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Build distributions | |
| run: python setup.py sdist bdist_wheel | |
| - name: Publish distribution 📦 to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.test_pypi_token }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| continue-on-error: true | |
| - name: Publish distribution 📦 to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.pypi_token }} |