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A chunked data container that can be compressed in-memory.
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carray: A chunked data container that can be compressed in-memory ================================================================= carray is a chunked container for numerical data. Chunking allows for efficient enlarging/shrinking of data container. In addition, it can also be compressed for reducing memory needs. The compression process is carried out internally by Blosc, a high-performance compressor that is optimized for binary data. Rational -------- By using compression, you can deal with more data using the same amount of memory. In case you wonder: which is the price to pay in terms of performance? you should know that nowadays memory access is the most common bottleneck in many computational scenarios, and CPUs spend most of its time waiting for data, and having data compressed in memory can reduce the stress of the memory subsystem. In other words, the ultimate goal for carray is not only reducing the memory needs of large arrays, but also making carray operations to go faster than using a traditional ndarray object from NumPy. That is already the case for some special cases now (2011), but will happen more generally in a short future, when carray will be able to take advantage of newer CPUs integrating more cores and wider vector units (256 bit and more). Building -------- Assuming that you have NumPy, Cython and a C compiler installed, do: $ python setup.py build_ext --inplace Testing ------- After compiling, you can quickly check that the package is sane by running: $ PYTHONPATH=. (or "set PYTHONPATH=." on Windows) $ export PYTHONPATH (not needed on Windows) $ python carray/tests/tests_all.py Installing ---------- Install it as a typical Python package: $ python setup.py install Documentation ------------- Please refer to the doc/ directory. The HTML manual is in doc/html/, and the PDF version is in doc/carray-manual.pdf. Of course, you can always access docstrings from the console (i.e. help(carray.ctable)). Also, you may want to look at the bench/ directory for some examples of use. Resources --------- Visit the main carray site repository at: http://github.com/FrancescAlted/carray You can download a source package from: http://carray.pytables.org/download Manual: http://carray.pytables.org/docs/manual Home of Blosc compressor: http://blosc.pytables.org User's mail list: email@example.com http://groups.google.com/group/carray License ------- Please see CARRAY.txt in LICENSES/ directory. Share your experience --------------------- Let us know of any bugs, suggestions, gripes, kudos, etc. you may have. Francesc Alted