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Merge with master #9

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razdoburdin
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rongou and others added 30 commits June 27, 2022 17:26
Fix 4 "graphiz" instead of "graphviz".
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
* Fix mypy error with latest dask.

Dask is adding type hints to its codebase and as the result, checks in XGBoost can be
performed more rigorously.

- Remove compatibility with old dask version where multi lock was missing.
- Restrict input of `X` to be non-series.
- Adopt latest definition of `Delayed`.
- Avoid passing optional `host_ip`.
- Avoid deprecated `worker.nthreads`.
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
- Remove unused parameters.
- Avoid comparison of different signedness.
* [CI] Fix S3 upload issues

* Don't launch Docker containers when uploading to S3
* Split up column matrix initialization.

This PR splits the column matrix initialization into 2 steps, the first one initializes
the storage while the second one does the transpose. By doing so, we can reuse the code
for Quantile DMatrix.
Additional changes:
- Use mamba for CPU test on Jenkins.
- Cleanup CPU test dependencies.
- Restore some of the modin tests
The flakiness is caused by the global random engine, which will take some time to fix.
hcho3 and others added 19 commits July 28, 2022 12:57
* Fix compatibility with latest cupy.

* Freeze mypy.
- Add a new `QuantileDMatrix` that works for both CPU and GPU.
- Deprecate `DeviceQuantileDMatrix`.
…8131)

* use the validation_indicator model

* use the validation_indicator model for regression
- Try to load DMatrix binary before trying to parse text input.
- Remove some unmaintained code.
Load data set via `sklearn` rather than a local file path.
- Copy `GHistIndexMatrix` to `Ellpack` when needed.
Added "of" to "objective functions is that they consist of two parts" in line 32 of ./doc/tutorials/model.rst
…nk (#8157)

Bumps hadoop-common from 3.2.3 to 3.2.4.

---
updated-dependencies:
- dependency-name: org.apache.hadoop:hadoop-common
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@razdoburdin razdoburdin reopened this Aug 16, 2022
@razdoburdin razdoburdin changed the base branch from optimization/applysplit/full/optimization to master August 16, 2022 14:33
@razdoburdin razdoburdin changed the base branch from master to optimization/applysplit/full/optimization August 16, 2022 14:33
@razdoburdin razdoburdin reopened this Aug 16, 2022
@razdoburdin razdoburdin merged commit 33a28c4 into razdoburdin:optimization/applysplit/full/optimization Aug 16, 2022
razdoburdin added a commit that referenced this pull request Oct 26, 2023
* [backport] Support pandas 2.1.0. (dmlc#9557) (dmlc#9655)

* [backport] Add support for cgroupv2. (dmlc#9651) (dmlc#9656)

* Bump version to 2.0.1. (dmlc#9660)

* [backport] [CI] Pull CentOS 7 images from NGC (dmlc#9666) (dmlc#9668)

* Fix build for GCC 8.x (dmlc#9670)

* [backport][pyspark] Support stage-level scheduling (dmlc#9519) (dmlc#9686)

Co-authored-by: Bobby Wang <wbo4958@gmail.com>

* Fix build for AppleClang 11 (dmlc#9684)

* Fix libpath logic for Windows (dmlc#9687)

* [CI] Build libxgboost4j.dylib for Intel Mac (dmlc#9704)

* [jvm-packages] Remove hard dependency on libjvm (dmlc#9698) (dmlc#9705)

* Use sys.base_prefix instead of sys.prefix (dmlc#9711)

* Use sys.base_prefix instead of sys.prefix

* Update libpath.py too

---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Bobby Wang <wbo4958@gmail.com>
razdoburdin added a commit that referenced this pull request Oct 26, 2023
* [backport] Support pandas 2.1.0. (dmlc#9557) (dmlc#9655)

* [backport] Add support for cgroupv2. (dmlc#9651) (dmlc#9656)

* Bump version to 2.0.1. (dmlc#9660)

* [backport] [CI] Pull CentOS 7 images from NGC (dmlc#9666) (dmlc#9668)

* Fix build for GCC 8.x (dmlc#9670)

* [backport][pyspark] Support stage-level scheduling (dmlc#9519) (dmlc#9686)

Co-authored-by: Bobby Wang <wbo4958@gmail.com>

* Fix build for AppleClang 11 (dmlc#9684)

* Fix libpath logic for Windows (dmlc#9687)

* [CI] Build libxgboost4j.dylib for Intel Mac (dmlc#9704)

* [jvm-packages] Remove hard dependency on libjvm (dmlc#9698) (dmlc#9705)

* Use sys.base_prefix instead of sys.prefix (dmlc#9711)

* Use sys.base_prefix instead of sys.prefix

* Update libpath.py too

---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Bobby Wang <wbo4958@gmail.com>
razdoburdin added a commit that referenced this pull request Oct 26, 2023
razdoburdin added a commit that referenced this pull request Oct 27, 2023
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